Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2414 538 4e-148 seq1321 116 4e-21 >seq2414 Length=19474 Score = 538 bits (596), Expect = 4e-148 Identities = 1188/1756 (68%), Gaps = 79/1756 (4%) Strand=Plus/Minus Query 78208 CCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTCGACAGCTTGGCCAGACTC 78267 || |||||||| || |||||| ||||| | |||||| | |||| || ||| Sbjct 3455 CCAGTCTTGAGGCCACGCTTCCAGCCGTAGAAGTGCATGGAGGTGAGCT--GCGAGAACG 3398 Query 78268 --GGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATGTACGCACCGCGGTCGG 78325 |||||| | | |||||||||||||||| |||||||||| |||| || ||||||| Sbjct 3397 AGGGGTTCGAAAGGTGGATGTTGAGCGACTGGCTCTGGTCGATGAACGCGCCACGGTCGG 3338 Query 78326 CCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTCCGGTAAATGGCCTTCA 78385 | || | ||||||||| | ||| |||| ||||||||||| ||| ||| |||||||| | Sbjct 3337 CGGCGAGGTCGATGACGGCCTTCTGCGAAATCTCCCAGACCGTCTTGTAGATGGCCTTGA 3278 Query 78386 GCTCTTCCTGGATGTCCAGCGCTTGTAC--GCTCCCACC--GGCTCGC-ACAATTTCATT 78440 ||| ||| |||||| | | ||| | | || ||| || | || | || || Sbjct 3277 TCTCGTCCGGGATGTT--GGGAATGTTCTGGATCGAACCACGGTTGGCGATGATGAGGTT 3220 Query 78441 CTTAATTTGAGGGTTCCAG----CGA--TTGATCTTCTGAAGATCCCGGACCAGGTGCC- 78493 ||| || | || |||| ||| |||||| || || || |||| ||| Sbjct 3219 CTTCATGTTGTCGTCCCAGATGCCGAGGTTGATC------AGGTCACG---CAGGAGCCA 3169 Query 78494 -GGTTAATCATGAC---GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTG 78549 || | || || ||| || || | || ||||| ||||| | | ||| Sbjct 3168 TGGGCAGACA--ACCTGGAAGTCACCCGAGAGCACACGGCGAGCGTAGAGCATCGAGGTG 3111 Query 78550 TACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGT 78609 || |||||||| |||||| || | |||||| | |||||| || || |||||||| Sbjct 3110 TATGGCTCGAAGCACTCGTTCCAGCCGAGGATCTGCGAGGTCGAAGCAGTAGGCATGGGG 3051 Query 78610 GCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCT-CG-ACCTTTAGG----CCG 78663 || || || || || || || | ||| ||| |||||| || || ||| | | Sbjct 3050 GCAACGAGAAGCGAGTTGCGCACACCGTGCTCGCTGATCTGCGCACGGAGAGGGGCCCAG 2991 Query 78664 TCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGGACGCC 78723 ||||| | || | | || ||||| | ||| || || | |||| ||| Sbjct 2990 TCCCAGAGGTCGGTAGGAGCACGGCCCCAGAGGTCGAACTGGAGCTTGCCCTGGGAGATG 2931 Query 78724 GGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGC---ATGACTCG 78780 ||||| |||| | ||| ||| || ||||||||| || |||| | |||||| Sbjct 2930 GGCGAGCCCTCGTACGAGGGGTACTTGCCGAGCTCCTTGGCAAGCTCGCTGGACGACTCG 2871 Query 78781 AGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTG---TTGAGCTCGCGCGCCTTG 78837 || ||| |||||||| | | ||||||||| |||| |||||||| || |||| Sbjct 2870 AG---GGCGGCGTGGTAGATGGTCTCGAAGAT---CTTGAGGTTGAGCTCACGAGCCTCA 2817 Query 78838 GTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATA 78897 | | |||||| | | || ||| ||||||| ||||| || ||||| || |||| | Sbjct 2816 GGCGAGTCGAAGGGCATGCGGAGAGCCATGAAGGTGTCGGCGAGACCCTGAACACCGAGA 2757 Query 78898 GCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTCGGGTAAAAGTTCCGA 78957 ||| || ||||||||||||||| || || ||| ||| | ||||| |||| ||| Sbjct 2756 CCGACGGGGCGGTGGCGCATGTTGGAGTTGCGAGCCTCCTTGACGGGGTAGTAGTTGCGA 2697 Query 78958 TCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACAATTTGGCGAAA 79017 |||||| ||| ||||| ||||||||| || | ||||| || || ||| Sbjct 2696 GTGATGACCTGGTCGAGGTTCTTGGTGACGACCTTGGTGATCTCGTGCAGCTTCTTGAAG 2637 Query 79018 TCAAAA---TGATTTCCT-----TTGATGAAAGTCGGTAG-GCACAGCGATGCCAGGTTG 79068 || || ||| ||| | || || | || || ||| | ||| || |||||| Sbjct 2636 TCGTAAGTCTGAG--CCTCAAAGTCGACAAAGGCGGGAAGAGCA-ATCGAGGCAAGGTTG 2580 Query 79069 CACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGAC 79128 || ||||| |||||| || || ||| ||||| || ||||| | || |||||| Sbjct 2579 CAGACGGCGACCTCGTCAGGCGACGAGTACTCAATGATCTCAGTGCAGAGGTTGGACGAC 2520 Query 79129 TTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATG 79188 ||||||||||||| || || |||||| ||| ||| ||||||||||||| |||| Sbjct 2519 TTGATGGTGCCGAGGTGCTGCTGGTTCGACTTGGAGTTGGCGGCGTCCTTGTAGAGCATG 2460 Query 79189 TACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGG 79248 | || || |||||| |||| || ||| | || ||| | | | | ||| | Sbjct 2459 AAGGGACCACCAGTCTCAGTCTGAGCCTCGAGGATAGCGAACCAAAGCTTCTGAGCCTTG 2400 Query 79249 ACAACCTTCTTGTACCGACCCTGTGCGA-------CGTACGTCCGGTACAACTCGTTGAA 79301 | ||||| ||||||| ||| ||||| || ||| | || | ||| Sbjct 2399 ATGG---TCTTG---CGACCCT-TGCCCTCGCTCTCGTACTTCTCGTAAAGCTGCTCGAA 2347 Query 79302 AGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTC 79361 ||||| | ||| |||| ||||| ||||||||| |||||||| ||| |||||| Sbjct 2346 CTCCTCCGAGTGGACGTCGGCAAGGCCGGGGCACTCGGCGGGGCACATGAGGGTCCAGTC 2287 Query 79362 CTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTC 79421 ||||| ||| || || |||||||||||| |||||||| ||||| ||||||||| Sbjct 2286 GCCGTCCGCCTCGACACGCTTCATGAAGAGGTCGGGGATCCAGAGGGCGTAGAAGAGGTC 2227 Query 79422 GCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTC 79481 ||| |||||||||||| | ||| |||||| || || ||||| ||||| | || ||| Sbjct 2226 ACGGGCACGCATCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAAGTCGAAGACGTC 2167 Query 79482 GGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTT 79541 ||||||||| ||||| || |||||||| || | ||| ||||||| ||||||||||| Sbjct 2166 GGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCGGGGCGCTTGTTGCCGCCCTGGTC 2107 Query 79542 GACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCC 79601 |||||| || || ||| | | | | ||||||||||| ||||| |||| || | || Sbjct 2106 GACGTAACGAGCAGTGGCATCGTACGCACGGAGCATGGGAACGATACCGTTGGAGTAACC 2047 Query 79602 GTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGGATTCCGATGCC 79661 ||| || ||| || | || | || || ||||| | ||||| || || || Sbjct 2046 GTTGGTACCGGCAATGTACGAGCCCTTGGCACGGATGTTGTGGATGTGGAGACCAATACC 1987 Query 79662 CCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGA 79721 |||| ||||||||| || ||||| |||||| || ||||||||||| || ||||| Sbjct 1986 GCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTTGAGGGTGTCGTAGATGCCATCAATCGA 1927 Query 79722 GTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTT 79781 |||||||||||| ||||| |||||||| |||||||| | || ||||| ||||| Sbjct 1926 GTCGTCCTTCATGGCGACAAGGAAGCAAGATGACATCTGAGCGTGAGGAGTACCAGCGTT 1867 Query 79782 GAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTT 79841 ||||||||| |||| ||||| |||||| | | ||| || | || ||||| | Sbjct 1866 GAAGAGGGTAGGCGAAGCGTGGGTGAAGTAGCGCTCCGACATGAGGTTATAGGTCTCGAT 1807 Query 79842 GACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTG-GG 79900 ||| || || || |||||||||||| ||||| | || ||||| | | || ||| || Sbjct 1806 GACACGGTCGATGTTGTCGCCGTGGATACCGACGGACACACGCATAAGCATGTGCTGCGG 1747 Query 79901 GCGTCTCGCCGACATT 79916 ||| |||| |||| || Sbjct 1746 GCG-CTCGGCGACCTT 1732 Score = 488 bits (540), Expect = 6e-133 Identities = 1149/1711 (67%), Gaps = 49/1711 (3%) Strand=Plus/Plus Query 19118 ATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGCGAGACATACGAC 19177 ||||| || | ||||| ||||| |||||| || || || ||| |||||| || || Sbjct 1762 ATGCGTGTGTCCGTCGGTATCCACGGCGACAACATCGACCGTGTCATCGAGACCTATAAC 1821 Query 19178 CTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAAC 19237 || ||| || | |||||| ||||| |||| ||||| |||||||| ||||| Sbjct 1822 CTCATGTCGGAGCGCTACTTCACCCACGCTTCGCCTACCCTCTTCAACGCTGGTACTCCT 1881 Query 19238 AACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATC 19297 || | |||||||| || ||||| || || |||||||| ||| ||||| |||||| Sbjct 1882 CACGCTCAGATGTCATCTTGCTTCCTTGTCGCCATGAAGGACGACTCGATTGATGGCATC 1941 Query 19298 TACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCAC 19357 ||||| || |||||| ||||| || ||||||||| |||| ||||| || ||||| Sbjct 1942 TACGACACCCTCAAGACCTGCGCTCAGATCTCCAAGACTGCCGGCGGTATTGGTCTCCAC 2001 Query 19358 TGCTCGAATATCCGGTCGAGTGGTACACGAATCAATG---GGACGAACGGAGTAGCCGAC 19414 | || ||||| | | || | || | || || | || ||||| || || Sbjct 2002 ATCCACAACATCCGTGCCAAGGG--CTCGTA-CATTGCCGGTACCAACGGTTACTCCAAC 2058 Query 19415 GGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGC 19474 |||||||| || |||||||| | | | | ||| || | |||||| ||||||| ||| Sbjct 2059 GGTATCGTTCCCATGCTCCGTGCGTACGATGCCACTGCTCGTTACGTCGACCAGGGCGGC 2118 Query 19475 GGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGAT 19534 ||| ||| || | || ||||||||||||||||| |||||||| |||||| | || Sbjct 2119 AACAAGCGCCCCGGTGCCTTTGCCATCTACCTCGAGCCTTGGCACGCCGACGTCTTCGAC 2178 Query 19535 TTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACG 19594 |||||||| || ||| |||||| || | ||||||||||| || ||||||||| Sbjct 2179 TTCCTCGACCTCCGCAAGAACCACGGCAAGGAGGAGATGCGTGCCCGTGACCTCTTCTAC 2238 Query 19595 GCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTG 19654 ||| | ||||| || ||||| |||||| || || ||| ||||| || ||| ||| Sbjct 2239 GCCCTCTGGATCCCCGACCTCTTCATGAAGCGTGTCGAGGCGGACGGCGACTGGACCCTC 2298 Query 19655 ATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTTG 19714 |||||||| ||| ||||| ||||| |||||||| || |||| |||| | || | Sbjct 2299 ATGTGCCCCGCCGAGTGCCCCGGCCTTGCCGACGTCCACTCGGAGGAGTTCGAGCAGCTT 2358 Query 19715 TACCGGACTTACGTAGCCCAGGGCC-GGTTCAAGAAGGTGGTCCGGGCCCGGGACGTCTG 19773 ||| || |||| | ||||| || || ||| || ||| | | | | || Sbjct 2359 TACGAGAAGTACGAGAGCGAGGGCAAGGGTCGC-AAGACCATCAAGGCTCAGAAGCTTTG 2417 Query 19774 GGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGC 19833 | | ||||| | ||| ||||| || || | |||| |||||||||||| Sbjct 2418 GTTCGCTATCCTCGAGGCTCAGACTGAGACTGGTGGTCCCTTCATGCTCTACAAGGACGC 2477 Query 19834 CGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTAC 19893 ||| ||| ||||||| || ||| || || ||||| | ||||||||||||||||| || || Sbjct 2478 CGCCAACTCCAAGTCGAACCAGCAGCACCTCGGCACCATCAAGTCGTCCAACCTCTGCAC 2537 Query 19894 TGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGTG 19953 ||| ||||| ||| || ||| |||||| ||||| || || || || || | || Sbjct 2538 TGAGATCATTGAGTACTCGTCGCCTGACGAGGTCGCCGTCTGCAACCTTGCCTCGAT-TG 2596 Query 19954 C-CTGCCGACTTTCGTCAAG-----GCCTCCTCCTT-CGACTTTGCCAAATTGTACGAGG 20006 | || || | || ||| | | ||| ||| |||||| || || ||||| Sbjct 2597 CTCTTCCCGCCTTTGTCGACTTTGAGGCTCAGACTTACGACTTCAAGAAGCTGCACGAGA 2656 Query 20007 TGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCCGACCG 20066 | ||| ||||||||| || || | | |||||| ||| |||| ||||| | Sbjct 2657 TCACCAAGGTCGTCACCAAGAACCTCGACCAGGTCATCACTCGCAACTACTACCCCGTCA 2716 Query 20067 AGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGG 20126 ||| ||| ||||| || || ||||||||||| || ||| |||| || ||||| || | Sbjct 2717 AGGAGGCTCGCAACTCCAACATGCGCCACCGCCCCGTCGGTCTCGGTGTTCAGGGTCTCG 2776 Query 20127 CCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAA-- 20184 ||||| |||||| ||| || | | |||||| || |||| || |||||||| Sbjct 2777 CCGACACCTTCATGGCTCTCCGCATGCCCTTCGACTCGCCTGAGGCTCGTGAGCTCAACC 2836 Query 20185 -CAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGT---GCGAACTCG 20240 |||| ||||||||| || | |||||||| |||||| || |||| |||| || | Sbjct 2837 TCAAG---ATCTTCGAGACCATCTACCACGCCGCCCTC---GAGTCGTCCAGCGAGCTTG 2890 Query 20241 CCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCC 20300 |||| ||| |||| |||| ||| | |||| |||||| ||| |||| | |||| Sbjct 2891 CCAAGGAGCTCGGCAAGTACCCCTCGTACGAGGGCTCGCCCATCTCCCAGGGCAAGCTCC 2950 Query 20301 AGCCGGACATGTGGGGCGTCACTGAGAATGAGTTTTGG---AGCGCC---CTCAAGGTTG 20354 || ||| | |||||| || | || | ||| | ||| ||| | Sbjct 2951 AGTTCGACCTCTGGGGCCGTGCTCCTACCGACCTCTGGGACTGGGCCCCTCTCCGTGCGC 3010 Query 20355 AGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGA 20414 |||||| ||||| | ||||||||| | ||||| || |||||||| || || |||| Sbjct 3011 AGATCAGCGAGCACGGTGTGCGCAACTCGCTTCTCGTTGCCCCCATGCCTACTGCTTCGA 3070 Query 20415 CCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTGC 20474 || | |||||| | || |||||| |||||||| ||||| | | ||||| | Sbjct 3071 CCTCGCAGATCCTCGGCTGGAACGAGTGCTTCGAGCCATACACCTCGATGCTCTACGCTC 3130 Query 20475 GTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACCTGG----TCCGCGACTTG 20530 | ||| || | ||||| ||| || ||| | || | ||| | || ||| || Sbjct 3131 GCCGTGTGCTCTCGGGTGACTTC--CA-GGTTGTC-TGCCCATGGCTCCTGCGTGACCTG 3186 Query 20531 CAGAAGATCGATATGTGGTCGCCCAAAATTAAGAATGAAATTGTC-CGAGCCGGCGGGAG 20589 || ||| || ||| ||| || ||||| || || | | ||| || Sbjct 3187 ATCAACCTCGGCATCTGGGACGACAACATGAAGAACCTCATCATCGCCAACCG--TGGTT 3244 Query 20590 CG-TCCAG-GCATT--GGATATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGG 20645 || ||||| |||| | ||||| | | |||||| ||| |||| ||| || |||| Sbjct 3245 CGATCCAGAACATTCCCAACATCCCGGACGAGATCAAGGCCATCTACAAGACGGTCTGGG 3304 Query 20646 AAATCCCACAGAAGAGCATCATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGT 20705 | || | |||||| | |||||||| | || ||||| || ||||| | |||||||||| Sbjct 3305 AGATTTCGCAGAAGGCCGTCATCGACCTCGCCGCCGACCGTGGCGCGTTCATCGACCAGA 3364 Query 20706 CCCAGTCGCTCAATGTCTTCATGGAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATA 20765 |||||||||||| || | | ||| || | || |||| | ||||||||| Sbjct 3365 GCCAGTCGCTCAACATCCACCTTTCGAACCCCTCGTTCTCGCAGCTCACCTCCATGCACT 3424 Query 20766 TGTACGGCTGGCACAAGGGGCTCAAGACGGG 20796 | ||||||||| | || |||||||| || Sbjct 3425 TCTACGGCTGGAAGCGTGGCCTCAAGACTGG 3455 >seq1321 Length=24731 Score = 116 bits (128), Expect = 4e-21 Identities = 105/132 (80%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 ||||| || || ||||| || || || || ||||||||||| ||||| ||| || || Sbjct 19048 CGTCTGATCGCCTTTGCGTGTGTTGAGGGCATCTTCTTCTCGGGCTCATTCGCGGCCATC 19107 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 ||||||||||| |||||||| || |||| ||||| | |||||||||||||| || || Sbjct 19108 TTCTGGCTCAAGAAGCGTGGTCTGATGCGCGGCCTCACCTTCTCCAACGAGCTCATCTCG 19167 Query 60102 CGGGACGAGGGC 60113 || ||||||||| Sbjct 19168 CGCGACGAGGGC 19179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548498594227680