Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq2414 289 3e-73
seq252 179 4e-40
seq2988 174 2e-38
seq1321 82.4 8e-11
>seq2414
Length=19474
Score = 289 bits (320), Expect = 3e-73
Identities = 532/773 (69%), Gaps = 10/773 (1%)
Strand=Plus/Plus
Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254
||||| || || | ||||||||||| ||| || | |||||| ||||| || ||
Sbjct 1762 ATGCGTGTGTCCGTCGGTATCCACGGCGACAACATCGACCGTGTCATCGAGACCTATAAC 1821
Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314
| ||| | ||||| || ||||| |||| ||||| |||||||||||||| |
Sbjct 1822 CTCATGTCGGAGCGCTACTTCACCCACGCTTCGCCTACCCTCTTCAACGCTGGTACTCCT 1881
Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374
||| |||||||||| |||||||| || || |||||||| |||||||| || ||||||
Sbjct 1882 CACGCTCAGATGTCATCTTGCTTCCTTGTCGCCATGAAGGACGACTCGATTGATGGCATC 1941
Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC 53434
||||| || |||||| || || || ||||||||| | || ||||| ||| |||||
Sbjct 1942 TACGACACCCTCAAGACCTGCGCTCAGATCTCCAAGACTGCCGGCGGTATTGGTCTCCAC 2001
Query 53435 TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGA 53494
| ||| ||||||| || ||| | || || || ||||| | || | ||
Sbjct 2002 ATCCACAACATCCGTGCCAAGGGCTCGTACATTGCCGGTACCAACGGTTACTCCAACGGT 2061
Query 53495 ATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGG 53554
||||| || |||||||| | | | | ||| || || |||||| ||||||| ||
Sbjct 2062 ATCGTTCCCATGCTCCGTGCGTACGATGCCACTGCTCGTTACGTCGACCAGGGCGGCAAC 2121
Query 53555 AAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTT 53614
|||||| || | || ||||||||||||||||| |||||||||||| | | || ||
Sbjct 2122 AAGCGCCCCGGTGCCTTTGCCATCTACCTCGAGCCTTGGCACGCCGACGTCTTCGACTTC 2181
Query 53615 CTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGC 53673
||||| || || ||| || || | || |||||||| ||||||||| || ||| ||
Sbjct 2182 CTCGACCTCCGCAAGAACCACGGCAAGGAGGAGATGCGTGCCCGTGACCTCTTCTAC-GC 2240
Query 53674 TCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGAT 53733
|| ||||| || |||||||||||| | || ||| ||||| || ||| ||| ||
Sbjct 2241 CCTCTGGATCCCCGACCTCTTCATGAAGCGTGTCGAGGCGGACGGCGACTGGACCCTCAT 2300
Query 53734 GTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTA 53793
|||||| ||||||||||||||| | ||| || |||||||| | || | ||
Sbjct 2301 GTGCCCCGCCGAGTGCCCCGGCCTTGCCGACGTCCACTCGGAGGAGTTCGAGCAGCTTTA 2360
Query 53794 TCGGACGTACGCAGTTC-AGGGC---CGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTAT 53849
|| ||||| || | ||||| | ||||| | ||||||| | || | |
Sbjct 2361 CGAGAAGTACG-AGAGCGAGGGCAAGGGTCGCAAGACCA---TCAAGGCTCAGAAGCTTT 2416
Query 53850 GGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATT 53909
|| || |||||| || ||| ||||| || || | |||| |||||||||
Sbjct 2417 GGTTCGCTATCCTCGAGGCTCAGACTGAGACTGGTGGTCCCTTCATGCTCTACAAGGACG 2476
Query 53910 CGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962
| | |||| ||| |||||| || || ||||| |||||| ||| ||||
Sbjct 2477 CCGCCAACTCCAAGTCGAACCAGCAGCACCTCGGCACCATCAAGTCGTCCAAC 2529
Score = 91.5 bits (100), Expect = 2e-13
Identities = 171/245 (70%), Gaps = 10/245 (4%)
Strand=Plus/Plus
Query 55097 GACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATC 55156
||||| | ||||| ||||| | || || || || |||||| ||| |||||||
Sbjct 2635 GACTTCAAGAAGCTGCACGAGATCACCAAGGTCGTCACCAAGAACCTCGACCAGGTCATC 2694
Query 55157 GACAAG-AATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCAT 55215
|| | || |||||||| | | ||| ||||| |||||| | || ||||| ||| |
Sbjct 2695 -ACTCGCAACTACTACCCCGTCAAGGAGGCTCGCAACTCCAACATGCGCCACCGCCCCGT 2753
Query 55216 CGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGACTC 55275
|| ||||||| ||||| | ||||||| ||||||| ||| | |||||||||||||
Sbjct 2754 CGGTCTCGGTGTTCAGGGTCTCGCCGACACCTTCATGGCTCTCCGCATGCCCTTCGACTC 2813
Query 55276 GGAACCT---GCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGC 55331
| ||| ||||| || | |||| | |||||| || | ||||||| || || |
Sbjct 2814 G---CCTGAGGCTCGTGAGCTCAACCTCAAGATCTTCGAGAC-CATCTACCACGCCGCCC 2869
Query 55332 TCGAG 55336
|||||
Sbjct 2870 TCGAG 2874
>seq252
Length=28045
Score = 179 bits (198), Expect = 4e-40
Identities = 312/452 (69%), Gaps = 4/452 (1%)
Strand=Plus/Plus
Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935
|||||||| || || || |||||||||| ||||||||||| ||| | || ||| ||
Sbjct 5773 CCGGTACCAATACCGTCCGCACCGTTGATGAGAATCATCGGAACAGTCGGCAAGTAGTAC 5832
Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995
|| ||||| | | || ||||| || | | ||| | | || | | ||| || ||
Sbjct 5833 TCGGGCTCGATACGCTGGCCGTCCTCAACAAGGTAGGTAAGAAGTGGGTCGTCCGCTGGG 5892
Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGC--GTGAAGATGTATCGGGAGCTGGCCG 152053
| ||| | || ||||| | | | | ||||| ||||| || | |||||| |
Sbjct 5893 TGGAACACAGCGCGGGTCATCG--CGGAGGTGTTGGTGAAAATGTAACGAGCGCTGGCAG 5950
Query 152054 CATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGT 152113
| |||||||| || || ||||| || ||||| || ||||||||| | ||||| ||
Sbjct 5951 CGTCCTTGCCGCCCTGCATACGCGTACCGAACTGACCGTTGGGCTCGAGCAAGTTGATGT 6010
Query 152114 TGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCAC 152173
||||| ||| || || ||||| |||| | || |||||| || || |||| |||||
Sbjct 6011 TGTTGCTGCCAACAAACTTCTGCGCCAGACCAACGATCGTGGCCGTCAAACTCTGTTCAC 6070
Query 152174 CGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCG 152233
||||||| || ||||| | ||| | | ||| || | | ||| || ||||| || |||
Sbjct 6071 CGTGGTGGTAGGCCGTGTTCTCGGACACGTAACCACCAAGCTGTGCGACCTTAATCTCCT 6130
Query 152234 TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGT 152293
|| | ||||| ||||| ||| |||| || ||||||||||| || || | ||||
Sbjct 6131 TCTTGAGGTTACGCTTGAAGCAGCCGTACATAACCTTGCGCTGACCAGGCTTTAGGCCGT 6190
Query 152294 CCACCACGTGAGGAATCGAACGCTTGATGTCC 152325
| |||| ||||| |||||| || |||||
Sbjct 6191 CGGCCACCGAGGGAATGGAACGCATGTTGTCC 6222
Score = 156 bits (172), Expect = 5e-33
Identities = 215/298 (72%), Gaps = 2/298 (1%)
Strand=Plus/Plus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
|||||||||||||||| ||| ||||| |||||||| || | |||||||||||| ||
Sbjct 5926 GTGAAAATGTAACGAGCGCTGGCAGCGTCCTTGCCGCCCTGCATACGCGTACCGAACTGA 5985
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
|| | ||||| | | ||| | ||||||| ||| ||||| || || |||| ||
Sbjct 5986 CCGTTGGGCTCGAGCAAGTTGATGTTGTTGCTGCCAACAAACTTCTGCGCCAGACCAACG 6045
Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484
||||| | | ||| ||||| ||||| || ||||| | ||| | |||||| ||
Sbjct 6046 ATCGTGGCCGTCAAACTCTGTTCACCGTGGTGGTAGGCCGTGTTCTCGGACACGTAACCA 6105
Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544
| ||||| || ||||| || || | | ||||| ||||| |||| | || || |||
Sbjct 6106 CCAAGCTGTGCGACCTTAATCTCCTTCTTGAGGTTACGCTTGAAGCAGCCGTACATAACC 6165
Query 117545 TTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGG-ATCGAACGCTTGATGTCC 117601
|||||||||| ||||| || || || ||||| ||||| || |||||| || |||||
Sbjct 6166 TTGCGCTGACCAGGCTTTAGGCCGTCGGCCAC-CGAGGGAATGGAACGCATGTTGTCC 6222
>seq2988
Length=9850
Score = 174 bits (192), Expect = 2e-38
Identities = 308/449 (69%), Gaps = 0/449 (0%)
Strand=Plus/Plus
Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211
||||| |||||||| || || ||||| || ||||||| ||| ||| || | |||| ||
Sbjct 1899 CCAGTACCGATACCATCCGCGCCATTGATGAGAATCAGCGGAACGGTTGGCAAGTAGTAC 1958
Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271
|| ||||| | || | ||||| || || ||| | || | || | ||| |||
Sbjct 1959 TCGGGCTCGATGCGCTGGCCGTCCTCGACGAGGTAGGTAAGAAGCGGGTCGTCGGCGGGA 2018
Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331
| ||| | |||| || | | |||||||||||||| | ||| |||||
Sbjct 2019 TGGAACACAGCGCGGGTCATCGCGGACGTGTTGGTGAAAATGTAACGCGCGCTGGCAGCG 2078
Query 117332 TCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTG 117391
||||| ||||| | |||||||||||| || || | ||||| | | ||| | ||||
Sbjct 2079 TCCTTTCCACCCTGCATACGCGTACCGAACTGACCGTTGGGCTCGAGCAAGTTGATGTTG 2138
Query 117392 TTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCA 117451
||| ||||||||| || || || | |||||| ||| | || ||| || ||
Sbjct 2139 TTGCTGCCCACAAACTTCTGTGCGAGACCGACAATGGTAGCAGTCAGACTCTGTTCGCCG 2198
Query 117452 TGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGAC 117511
||||| |||||||| | ||| | |||||| || | ||||| || ||||| || || |
Sbjct 2199 TGGTGGTACGCCGTGTTCTCGGACACGTAACCACCGAGCTGCGCGACCTTGATCTCCTTC 2258
Query 117512 GTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCC 117571
| || || ||||| |||| | || || ||||||||||||| ||||| || || ||
Sbjct 2259 TTGAGATTACGCTTGAAGCAGCCGTACATGACCTTGCGCTGACCGGGCTTGAGGCCGTCG 2318
Query 117572 GCCACGTGAGGGATCGAACGCTTGATGTC 117600
|| || |||||||||||| || ||||
Sbjct 2319 GCAACCGATGGGATCGAACGCATGTTGTC 2347
Score = 158 bits (174), Expect = 1e-33
Identities = 307/453 (68%), Gaps = 8/453 (2%)
Strand=Plus/Plus
Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935
|| |||||||| || || || || |||| ||||||| ||| || | || ||| ||
Sbjct 1899 CCAGTACCGATACCATCCGCGCCATTGATGAGAATCAGCGGAACGGTTGGCAAGTAGTAC 1958
Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995
|| ||||| | | || ||||| || | | ||| | | || | | ||| || |||
Sbjct 1959 TCGGGCTCGATGCGCTGGCCGTCCTCGACGAGGTAGGTAAGAAGCGGGTCGTCGGCGGGA 2018
Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGT----GAAGATGTATCGGGAGCTGGC 152051
| ||| | || ||||| | | ||| || ||| ||||| || | ||||||
Sbjct 2019 TGGAACACAGCGCGGGTCATCG----CGGACGTGTTGGTGAAAATGTAACGCGCGCTGGC 2074
Query 152052 CGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAG 152111
|| ||||| ||||| || ||||| || ||||| || ||||||||| | |||||
Sbjct 2075 AGCGTCCTTTCCACCCTGCATACGCGTACCGAACTGACCGTTGGGCTCGAGCAAGTTGAT 2134
Query 152112 GTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTC 152171
||||||| |||||| || ||||| || | | ||||| || | ||||||| |||
Sbjct 2135 GTTGTTGCTGCCCACAAACTTCTGTGCGAGACCGACAATGGTAGCAGTCAGACTCTGTTC 2194
Query 152172 ACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC 152231
|||||||| |||||||| | ||| | | ||| || | | |||||| ||||| || ||
Sbjct 2195 GCCGTGGTGGTACGCCGTGTTCTCGGACACGTAACCACCGAGCTGCGCGACCTTGATCTC 2254
Query 152232 CGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACC 152291
| || | || || ||||| ||| |||| || ||||||||||| || || | ||
Sbjct 2255 CTTCTTGAGATTACGCTTGAAGCAGCCGTACATGACCTTGCGCTGACCGGGCTTGAGGCC 2314
Query 152292 GTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324
||| | || || ||||||||| || ||||
Sbjct 2315 GTCGGCAACCGATGGGATCGAACGCATGTTGTC 2347
>seq1321
Length=24731
Score = 82.4 bits (90), Expect = 8e-11
Identities = 71/88 (81%), Gaps = 0/88 (0%)
Strand=Plus/Minus
Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864
||||| |||| || ||||||||||| | ||| |||||||| ||| || || ||||
Sbjct 19142 AGGCCGCGCATCAGACCACGCTTCTTGAGCCAGAAGATGGCCGCGAATGAGCCCGAGAAG 19083
Query 74865 AAGATGCCTTCGACACACGCAAAGGCGA 74892
|||||||| || ||||||||||||||||
Sbjct 19082 AAGATGCCCTCAACACACGCAAAGGCGA 19055
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547189856755600
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