Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2414 289 3e-73 seq252 179 4e-40 seq2988 174 2e-38 seq1321 82.4 8e-11 >seq2414 Length=19474 Score = 289 bits (320), Expect = 3e-73 Identities = 532/773 (69%), Gaps = 10/773 (1%) Strand=Plus/Plus Query 53195 ATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACGAC 53254 ||||| || || | ||||||||||| ||| || | |||||| ||||| || || Sbjct 1762 ATGCGTGTGTCCGTCGGTATCCACGGCGACAACATCGACCGTGTCATCGAGACCTATAAC 1821 Query 53255 TTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAAT 53314 | ||| | ||||| || ||||| |||| ||||| |||||||||||||| | Sbjct 1822 CTCATGTCGGAGCGCTACTTCACCCACGCTTCGCCTACCCTCTTCAACGCTGGTACTCCT 1881 Query 53315 CACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATC 53374 ||| |||||||||| |||||||| || || |||||||| |||||||| || |||||| Sbjct 1882 CACGCTCAGATGTCATCTTGCTTCCTTGTCGCCATGAAGGACGACTCGATTGATGGCATC 1941 Query 53375 TACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC 53434 ||||| || |||||| || || || ||||||||| | || ||||| ||| ||||| Sbjct 1942 TACGACACCCTCAAGACCTGCGCTCAGATCTCCAAGACTGCCGGCGGTATTGGTCTCCAC 2001 Query 53435 TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGA 53494 | ||| ||||||| || ||| | || || || ||||| | || | || Sbjct 2002 ATCCACAACATCCGTGCCAAGGGCTCGTACATTGCCGGTACCAACGGTTACTCCAACGGT 2061 Query 53495 ATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGG 53554 ||||| || |||||||| | | | | ||| || || |||||| ||||||| || Sbjct 2062 ATCGTTCCCATGCTCCGTGCGTACGATGCCACTGCTCGTTACGTCGACCAGGGCGGCAAC 2121 Query 53555 AAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTT 53614 |||||| || | || ||||||||||||||||| |||||||||||| | | || || Sbjct 2122 AAGCGCCCCGGTGCCTTTGCCATCTACCTCGAGCCTTGGCACGCCGACGTCTTCGACTTC 2181 Query 53615 CTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGC 53673 ||||| || || ||| || || | || |||||||| ||||||||| || ||| || Sbjct 2182 CTCGACCTCCGCAAGAACCACGGCAAGGAGGAGATGCGTGCCCGTGACCTCTTCTAC-GC 2240 Query 53674 TCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGAT 53733 || ||||| || |||||||||||| | || ||| ||||| || ||| ||| || Sbjct 2241 CCTCTGGATCCCCGACCTCTTCATGAAGCGTGTCGAGGCGGACGGCGACTGGACCCTCAT 2300 Query 53734 GTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTA 53793 |||||| ||||||||||||||| | ||| || |||||||| | || | || Sbjct 2301 GTGCCCCGCCGAGTGCCCCGGCCTTGCCGACGTCCACTCGGAGGAGTTCGAGCAGCTTTA 2360 Query 53794 TCGGACGTACGCAGTTC-AGGGC---CGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTAT 53849 || ||||| || | ||||| | ||||| | ||||||| | || | | Sbjct 2361 CGAGAAGTACG-AGAGCGAGGGCAAGGGTCGCAAGACCA---TCAAGGCTCAGAAGCTTT 2416 Query 53850 GGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATT 53909 || || |||||| || ||| ||||| || || | |||| ||||||||| Sbjct 2417 GGTTCGCTATCCTCGAGGCTCAGACTGAGACTGGTGGTCCCTTCATGCTCTACAAGGACG 2476 Query 53910 CGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 | | |||| ||| |||||| || || ||||| |||||| ||| |||| Sbjct 2477 CCGCCAACTCCAAGTCGAACCAGCAGCACCTCGGCACCATCAAGTCGTCCAAC 2529 Score = 91.5 bits (100), Expect = 2e-13 Identities = 171/245 (70%), Gaps = 10/245 (4%) Strand=Plus/Plus Query 55097 GACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCATC 55156 ||||| | ||||| ||||| | || || || || |||||| ||| ||||||| Sbjct 2635 GACTTCAAGAAGCTGCACGAGATCACCAAGGTCGTCACCAAGAACCTCGACCAGGTCATC 2694 Query 55157 GACAAG-AATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCCCAT 55215 || | || |||||||| | | ||| ||||| |||||| | || ||||| ||| | Sbjct 2695 -ACTCGCAACTACTACCCCGTCAAGGAGGCTCGCAACTCCAACATGCGCCACCGCCCCGT 2753 Query 55216 CGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGATTGCCCTTCGACTC 55275 || ||||||| ||||| | ||||||| ||||||| ||| | ||||||||||||| Sbjct 2754 CGGTCTCGGTGTTCAGGGTCTCGCCGACACCTTCATGGCTCTCCGCATGCCCTTCGACTC 2813 Query 55276 GGAACCT---GCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGCGC 55331 | ||| ||||| || | |||| | |||||| || | ||||||| || || | Sbjct 2814 G---CCTGAGGCTCGTGAGCTCAACCTCAAGATCTTCGAGAC-CATCTACCACGCCGCCC 2869 Query 55332 TCGAG 55336 ||||| Sbjct 2870 TCGAG 2874 >seq252 Length=28045 Score = 179 bits (198), Expect = 4e-40 Identities = 312/452 (69%), Gaps = 4/452 (1%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 |||||||| || || || |||||||||| ||||||||||| ||| | || ||| || Sbjct 5773 CCGGTACCAATACCGTCCGCACCGTTGATGAGAATCATCGGAACAGTCGGCAAGTAGTAC 5832 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 || ||||| | | || ||||| || | | ||| | | || | | ||| || || Sbjct 5833 TCGGGCTCGATACGCTGGCCGTCCTCAACAAGGTAGGTAAGAAGTGGGTCGTCCGCTGGG 5892 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGC--GTGAAGATGTATCGGGAGCTGGCCG 152053 | ||| | || ||||| | | | | ||||| ||||| || | |||||| | Sbjct 5893 TGGAACACAGCGCGGGTCATCG--CGGAGGTGTTGGTGAAAATGTAACGAGCGCTGGCAG 5950 Query 152054 CATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGT 152113 | |||||||| || || ||||| || ||||| || ||||||||| | ||||| || Sbjct 5951 CGTCCTTGCCGCCCTGCATACGCGTACCGAACTGACCGTTGGGCTCGAGCAAGTTGATGT 6010 Query 152114 TGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCAC 152173 ||||| ||| || || ||||| |||| | || |||||| || || |||| ||||| Sbjct 6011 TGTTGCTGCCAACAAACTTCTGCGCCAGACCAACGATCGTGGCCGTCAAACTCTGTTCAC 6070 Query 152174 CGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCG 152233 ||||||| || ||||| | ||| | | ||| || | | ||| || ||||| || ||| Sbjct 6071 CGTGGTGGTAGGCCGTGTTCTCGGACACGTAACCACCAAGCTGTGCGACCTTAATCTCCT 6130 Query 152234 TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGT 152293 || | ||||| ||||| ||| |||| || ||||||||||| || || | |||| Sbjct 6131 TCTTGAGGTTACGCTTGAAGCAGCCGTACATAACCTTGCGCTGACCAGGCTTTAGGCCGT 6190 Query 152294 CCACCACGTGAGGAATCGAACGCTTGATGTCC 152325 | |||| ||||| |||||| || ||||| Sbjct 6191 CGGCCACCGAGGGAATGGAACGCATGTTGTCC 6222 Score = 156 bits (172), Expect = 5e-33 Identities = 215/298 (72%), Gaps = 2/298 (1%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||||||||||| ||| ||||| |||||||| || | |||||||||||| || Sbjct 5926 GTGAAAATGTAACGAGCGCTGGCAGCGTCCTTGCCGCCCTGCATACGCGTACCGAACTGA 5985 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | ||||| | | ||| | ||||||| ||| ||||| || || |||| || Sbjct 5986 CCGTTGGGCTCGAGCAAGTTGATGTTGTTGCTGCCAACAAACTTCTGCGCCAGACCAACG 6045 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 ||||| | | ||| ||||| ||||| || ||||| | ||| | |||||| || Sbjct 6046 ATCGTGGCCGTCAAACTCTGTTCACCGTGGTGGTAGGCCGTGTTCTCGGACACGTAACCA 6105 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544 | ||||| || ||||| || || | | ||||| ||||| |||| | || || ||| Sbjct 6106 CCAAGCTGTGCGACCTTAATCTCCTTCTTGAGGTTACGCTTGAAGCAGCCGTACATAACC 6165 Query 117545 TTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGG-ATCGAACGCTTGATGTCC 117601 |||||||||| ||||| || || || ||||| ||||| || |||||| || ||||| Sbjct 6166 TTGCGCTGACCAGGCTTTAGGCCGTCGGCCAC-CGAGGGAATGGAACGCATGTTGTCC 6222 >seq2988 Length=9850 Score = 174 bits (192), Expect = 2e-38 Identities = 308/449 (69%), Gaps = 0/449 (0%) Strand=Plus/Plus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 ||||| |||||||| || || ||||| || ||||||| ||| ||| || | |||| || Sbjct 1899 CCAGTACCGATACCATCCGCGCCATTGATGAGAATCAGCGGAACGGTTGGCAAGTAGTAC 1958 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 || ||||| | || | ||||| || || ||| | || | || | ||| ||| Sbjct 1959 TCGGGCTCGATGCGCTGGCCGTCCTCGACGAGGTAGGTAAGAAGCGGGTCGTCGGCGGGA 2018 Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331 | ||| | |||| || | | |||||||||||||| | ||| ||||| Sbjct 2019 TGGAACACAGCGCGGGTCATCGCGGACGTGTTGGTGAAAATGTAACGCGCGCTGGCAGCG 2078 Query 117332 TCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTG 117391 ||||| ||||| | |||||||||||| || || | ||||| | | ||| | |||| Sbjct 2079 TCCTTTCCACCCTGCATACGCGTACCGAACTGACCGTTGGGCTCGAGCAAGTTGATGTTG 2138 Query 117392 TTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCA 117451 ||| ||||||||| || || || | |||||| ||| | || ||| || || Sbjct 2139 TTGCTGCCCACAAACTTCTGTGCGAGACCGACAATGGTAGCAGTCAGACTCTGTTCGCCG 2198 Query 117452 TGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGAC 117511 ||||| |||||||| | ||| | |||||| || | ||||| || ||||| || || | Sbjct 2199 TGGTGGTACGCCGTGTTCTCGGACACGTAACCACCGAGCTGCGCGACCTTGATCTCCTTC 2258 Query 117512 GTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCC 117571 | || || ||||| |||| | || || ||||||||||||| ||||| || || || Sbjct 2259 TTGAGATTACGCTTGAAGCAGCCGTACATGACCTTGCGCTGACCGGGCTTGAGGCCGTCG 2318 Query 117572 GCCACGTGAGGGATCGAACGCTTGATGTC 117600 || || |||||||||||| || |||| Sbjct 2319 GCAACCGATGGGATCGAACGCATGTTGTC 2347 Score = 158 bits (174), Expect = 1e-33 Identities = 307/453 (68%), Gaps = 8/453 (2%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || |||||||| || || || || |||| ||||||| ||| || | || ||| || Sbjct 1899 CCAGTACCGATACCATCCGCGCCATTGATGAGAATCAGCGGAACGGTTGGCAAGTAGTAC 1958 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 || ||||| | | || ||||| || | | ||| | | || | | ||| || ||| Sbjct 1959 TCGGGCTCGATGCGCTGGCCGTCCTCGACGAGGTAGGTAAGAAGCGGGTCGTCGGCGGGA 2018 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGT----GAAGATGTATCGGGAGCTGGC 152051 | ||| | || ||||| | | ||| || ||| ||||| || | |||||| Sbjct 2019 TGGAACACAGCGCGGGTCATCG----CGGACGTGTTGGTGAAAATGTAACGCGCGCTGGC 2074 Query 152052 CGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAG 152111 || ||||| ||||| || ||||| || ||||| || ||||||||| | ||||| Sbjct 2075 AGCGTCCTTTCCACCCTGCATACGCGTACCGAACTGACCGTTGGGCTCGAGCAAGTTGAT 2134 Query 152112 GTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTC 152171 ||||||| |||||| || ||||| || | | ||||| || | ||||||| ||| Sbjct 2135 GTTGTTGCTGCCCACAAACTTCTGTGCGAGACCGACAATGGTAGCAGTCAGACTCTGTTC 2194 Query 152172 ACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC 152231 |||||||| |||||||| | ||| | | ||| || | | |||||| ||||| || || Sbjct 2195 GCCGTGGTGGTACGCCGTGTTCTCGGACACGTAACCACCGAGCTGCGCGACCTTGATCTC 2254 Query 152232 CGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACC 152291 | || | || || ||||| ||| |||| || ||||||||||| || || | || Sbjct 2255 CTTCTTGAGATTACGCTTGAAGCAGCCGTACATGACCTTGCGCTGACCGGGCTTGAGGCC 2314 Query 152292 GTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 ||| | || || ||||||||| || |||| Sbjct 2315 GTCGGCAACCGATGGGATCGAACGCATGTTGTC 2347 >seq1321 Length=24731 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||| |||| || ||||||||||| | ||| |||||||| ||| || || |||| Sbjct 19142 AGGCCGCGCATCAGACCACGCTTCTTGAGCCAGAAGATGGCCGCGAATGAGCCCGAGAAG 19083 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGA 74892 |||||||| || |||||||||||||||| Sbjct 19082 AAGATGCCCTCAACACACGCAAAGGCGA 19055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547189856755600