Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq2414 311 1e-79
seq252 159 4e-34
seq2686 158 1e-33
seq180 152 6e-32
seq2988 134 2e-26
seq238 113 5e-20
>seq2414
Length=19474
Score = 311 bits (344), Expect = 1e-79
Identities = 778/1167 (67%), Gaps = 31/1167 (3%)
Strand=Plus/Minus
Query 80610 CTTGGCCAGCTCAC---ACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCC 80666
|||||| ||||| | ||||||| | |||| ||||| || ||| ||| ||||
Sbjct 2895 CTTGGCAAGCTCGCTGGACGACTCGA---GGGCGGCGTGGTAGATGGTCTCGAAGAT--- 2842
Query 80667 CTTG---TTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACAC 80723
|||| || | | || |||| || |||||| | || || | ||||||
Sbjct 2841 CTTGAGGTTGAGCTCACGAGCCTCAGGCGAGTCGAAGGGCATGCGGAGAGCCATGAAGGT 2782
Query 80724 GTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA-TCGCTCGG 80782
||| || || |||||||| |||| ||| |||||||||||| |||| || | || |
Sbjct 2781 GTCGGCGAGACCCTGAACACCGAGACCGACGGGGCGGTGGCGCATGTTGGAGTTGCGAG- 2723
Query 80783 CCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCC 80842
||||| | ||||| |||| | |||||| ||| ||||| || || |||
Sbjct 2722 CCTCCTTGACGGGGTAGTAGTTGCGAGTGATGACCTGGTCGAGGTTCTTGGTGACGACCT 2663
Query 80843 GTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCT-----TC-ACAAATGCCG 80896
|| | || || || |||| |||||| | | ||| || ||||| || |
Sbjct 2662 TGGTGATCTCGTGCAGCTTCTTGAAGTCGTAAGTCTGAGCCTCAAAGTCGACAAAGGCGG 2603
Query 80897 GAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGA 80956
|||| | || || || ||||| ||||| ||||| |||| | |||| | ||
Sbjct 2602 GAAGAGCAATCGAGGCAAGGTTGCAGACGGCGACCTCGTCAGGCGACGAGTACTCAATGA 2543
Query 80957 TTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGT 81016
| || ||||| | || || ||||| || || || |||| | |||||| ||||||| ||
Sbjct 2542 TCTCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTCGACTTGGAGT 2483
Query 81017 TGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGG 81076
|| |||||||||||| |||| | || ||| ||||| ||| | || |||||| |
Sbjct 2482 TGGCGGCGTCCTTGTAGAGCATGAAGGGACCACCAGTCTCAGTCTGAGCCTCGAGGATAG 2423
Query 81077 CGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGG 81136
|| ||||| || | ||||||| |||||| ||||| ||| | | |||||
Sbjct 2422 CGAACCAAAGCTTCTGAGCCTTGATGGTCTTGCGACCCTTGCCCTCGCTCTCGTACTTCT 2363
Query 81137 CGTAA-GCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGG 81195
||||| ||| | ||||||| | ||| | || | ||| | ||||||||| |||
Sbjct 2362 CGTAAAGCTGC-TCGAACTCCTCCGAGTGGACGTCGGCAAGGCCGGGGCACTCGGCGGGG 2304
Query 81196 CACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAG 81255
||||| ||| ||||||| ||| ||| ||| ||||||||| ||| |||||||||
Sbjct 2303 CACATGAGGGTCCAGTCGCCGTCCGCCTCGACACGCTTCATGAAGAGGTCGGGGATCCAG 2244
Query 81256 AGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCG 81315
|||||| ||| ||||| ||| ||| |||||| | || ||||| ||| | |||
Sbjct 2243 AGGGCGTAGAAGAGGTCACGGGCACGCATCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCG 2184
Query 81316 AGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG- 81374
|| ||||| | || ||| || ||||| ||||| || || | ||| | | || |||
Sbjct 2183 AGGAAGTCGAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCGGGGCGC 2124
Query 81375 --ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATG 81432
||| ||||||| ||||||||| ||||| || | | |||| | ||| || | |
Sbjct 2123 TTGTTGCCGCCCTGGTCGACGTAACGAGCAGTGGCATCGTACGCACGGAGCATGGGAACG 2064
Query 81433 ATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTG 81492
||||| | || | |||||| ||||| | || ||| |||||||| || | ||| |
Sbjct 2063 ATACCGTTGGAGTAACCGTTGGTACCGGCAATGTACGAGCCCTTGGCACGGATGTTGTGG 2004
Query 81493 ATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCA 81552
|| ||||| || || || | ||| || |||||||| || || | ||| ||
Sbjct 2003 ATGTGGAGACCAATACCGCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTTGAGGGTGTCG 1944
Query 81553 TAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGG 81612
|| || || || || || | |||||| | | | ||| || |||||||||| |
Sbjct 1943 TAGATGCCATCAATCGAGTCGTCCTTCATGGCGACAAGGAAGCAAGATGACATCTGA--G 1886
Query 81613 CTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACA 81670
| | ||| || || ||||| || || || | ||||| |||| || || | ||||
Sbjct 1885 CGTGAGGAGTACCAGCGTTGAAGAGGGTAGGCGAAGCGTGGGTGAAGTAGCGCTCCGACA 1826
Query 81671 TCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACAC 81730
| |||| |||||| || |||| || || | ||| ||||| ||||||| | ||||
Sbjct 1825 TGAGGTTATAGGTCTCGATGACACGGTCGATGTTGTCGCCGTGGATACCGACGGACACAC 1766
Query 81731 GCATAAACATGTACTG-GGGCGTCTCG 81756
|||||| ||||| ||| ||||| ||||
Sbjct 1765 GCATAAGCATGTGCTGCGGGCG-CTCG 1740
>seq252
Length=28045
Score = 159 bits (176), Expect = 4e-34
Identities = 305/446 (68%), Gaps = 4/446 (1%)
Strand=Plus/Minus
Query 31959 CAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATA 32018
|| ||| |||||||| ||||| |||||||| |||||| ||||||||||| || ||
Sbjct 6216 CATGCGTTCCATTCCCTCGGTGGCCGACGGCCTAAAGCCTGGTCAGCGCAAGGTTATGTA 6157
Query 32019 CGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGT 32078
|| |||| ||||| ||||| || || || ||||| || ||||| || |||||
Sbjct 6156 CGGCTGCTTCAAGCGTAACCTCAAGAAGGAGATTAAGGTCGCACAGCTTGGTGGTTACGT 6097
Query 32079 GGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCT 32138
| | ||| | |||||||| |||||||| || | | || ||| || || ||
Sbjct 6096 GTCCGAGAACACGGCCTACCACCACGGTGAACAGAGTTTGACGGCCACGATCGTTGGTCT 6037
Query 32139 TGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGG 32198
|| ||||| ||||| || || ||| | ||||| |||||||| || ||||| ||
Sbjct 6036 GGCGCAGAAGTTTGTTGGCAGCAACAACATCAACTTGCTCGAGCCCAACGGTCAGTTCGG 5977
Query 32199 GACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACC--CGTCTC 32256
|| || | || |||||||| ||||| ||| | |||||||| |||||| | |||
Sbjct 5976 TACGCGTATGCAGGGCGGCAAGGACGCTGCCAGCGCTCGTTACATTTTCACCAACACCTC 5917
Query 32257 GCACCTTCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTT 32316
| | | ||| ||| | ||| |||| ||||||| | | || | ||| | ||
Sbjct 5916 -CGCGAT-GACCCGCGCTGTGTTCCACCCAGCGGACGACCCACTTCTTACCTACCTTGTT 5859
Query 32317 GATGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTG 32376
|| ||||| ||||| ||||||| | || |||| ||| |||||||||| | |
Sbjct 5858 GAGGACGGCCAGCGTATCGAGCCCGAGTACTACTTGCCGACTGTTCCGATGATTCTCATC 5799
Query 32377 AACGGTGCAGAAGGCATCGGAACGGG 32402
|||||||| || || || || || ||
Sbjct 5798 AACGGTGCGGACGGTATTGGTACCGG 5773
>seq2686
Length=8065
Score = 158 bits (174), Expect = 1e-33
Identities = 171/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || || ||||||||||| || || ||||| |||||
Sbjct 6789 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCC 6730
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | || | ||| | || || |||||||||||||| || || || ||||||
Sbjct 6729 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 6670
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || || ||||| ||||| |||||||| | || ||||| | ||||| ||
Sbjct 6669 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAAC 6610
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || || || || || || | || ||||| |||||
Sbjct 6609 ATCCAGAAGGAGTCGACCCTCCACCTCGTTCTTCGCCTTCGTGGTGG 6563
>seq180
Length=11059
Score = 152 bits (168), Expect = 6e-32
Identities = 159/209 (76%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486
|| ||||||||||| || ||||| ||||| ||||| || | ||| | || | |||
Sbjct 10930 CTCACCGGCAAGACGATCACTCTCGAGGTCGAGTCGTCGGACACCATCGACAACGTCAAG 10871
Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546
| || || |||||||||||||| |||||||| |||||||||||||| || || || ||
Sbjct 10870 TCGAAGATCCAGGACAAGGAGGGTATTCCTCCCGACCAGCAGCGTCTCATCTTCGCGGGA 10811
Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606
||||| |||||||| | ||| || || | ||||| || |||| ||||| || || ||
Sbjct 10810 AAGCAGCTCGAGGACGGTCGCACGCTTTCGGACTACAACATCCAGAAGGAGTCTACGCTC 10751
Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
|| || ||| | |||||||| ||||| ||
Sbjct 10750 CACCTGGTCCTCCGTCTTCGTGGTGGCCA 10722
>seq2988
Length=9850
Score = 134 bits (148), Expect = 2e-26
Identities = 205/292 (70%), Gaps = 0/292 (0%)
Strand=Plus/Minus
Query 31959 CAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATA 32018
|| ||| || || ||| || || |||||||||||||| ||||||||||| || ||
Sbjct 2342 CATGCGTTCGATCCCATCGGTTGCCGACGGCCTCAAGCCCGGTCAGCGCAAGGTCATGTA 2283
Query 32019 CGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGT 32078
|| |||| ||||| || || || || || ||||| |||||||| || |||||
Sbjct 2282 CGGCTGCTTCAAGCGTAATCTCAAGAAGGAGATCAAGGTCGCGCAGCTCGGTGGTTACGT 2223
Query 32079 GGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCT 32138
| | ||| | ||||| || ||||||||||| | || | ||||||||| ||
Sbjct 2222 GTCCGAGAACACGGCGTACCACCACGGCGAACAGAGTCTGACTGCTACCATTGTCGGTCT 2163
Query 32139 TGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGG 32198
|| ||||| ||||| || || ||| | ||||| |||||||| || ||||| ||
Sbjct 2162 CGCACAGAAGTTTGTGGGCAGCAACAACATCAACTTGCTCGAGCCCAACGGTCAGTTCGG 2103
Query 32199 GACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACC 32250
|| || | ||||| ||||| ||||| ||| | |||||||| ||||||
Sbjct 2102 TACGCGTATGCAGGGTGGAAAGGACGCTGCCAGCGCGCGTTACATTTTCACC 2051
>seq238
Length=11627
Score = 113 bits (124), Expect = 5e-20
Identities = 118/155 (76%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486
|| ||||||||||| || || |||||||| ||||| || | ||| | || | |||
Sbjct 11424 CTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATCGACAACGTCAAG 11483
Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546
| ||||| |||||||||||||| || ||||| |||||||||||||| || || || ||
Sbjct 11484 TCGAAAATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGTCTTATCTTCGCGGGC 11543
Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581
||||| |||||||| | || || || | |||||
Sbjct 11544 AAGCAGCTCGAGGACGGCCGCACTCTCTCGGACTA 11578
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570283153420640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |