Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2414 311 1e-79 seq252 159 4e-34 seq2686 158 1e-33 seq180 152 6e-32 seq2988 134 2e-26 seq238 113 5e-20 >seq2414 Length=19474 Score = 311 bits (344), Expect = 1e-79 Identities = 778/1167 (67%), Gaps = 31/1167 (3%) Strand=Plus/Minus Query 80610 CTTGGCCAGCTCAC---ACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCC 80666 |||||| ||||| | ||||||| | |||| ||||| || ||| ||| |||| Sbjct 2895 CTTGGCAAGCTCGCTGGACGACTCGA---GGGCGGCGTGGTAGATGGTCTCGAAGAT--- 2842 Query 80667 CTTG---TTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACAC 80723 |||| || | | || |||| || |||||| | || || | |||||| Sbjct 2841 CTTGAGGTTGAGCTCACGAGCCTCAGGCGAGTCGAAGGGCATGCGGAGAGCCATGAAGGT 2782 Query 80724 GTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA-TCGCTCGG 80782 ||| || || |||||||| |||| ||| |||||||||||| |||| || | || | Sbjct 2781 GTCGGCGAGACCCTGAACACCGAGACCGACGGGGCGGTGGCGCATGTTGGAGTTGCGAG- 2723 Query 80783 CCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCC 80842 ||||| | ||||| |||| | |||||| ||| ||||| || || ||| Sbjct 2722 CCTCCTTGACGGGGTAGTAGTTGCGAGTGATGACCTGGTCGAGGTTCTTGGTGACGACCT 2663 Query 80843 GTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCT-----TC-ACAAATGCCG 80896 || | || || || |||| |||||| | | ||| || ||||| || | Sbjct 2662 TGGTGATCTCGTGCAGCTTCTTGAAGTCGTAAGTCTGAGCCTCAAAGTCGACAAAGGCGG 2603 Query 80897 GAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGA 80956 |||| | || || || ||||| ||||| ||||| |||| | |||| | || Sbjct 2602 GAAGAGCAATCGAGGCAAGGTTGCAGACGGCGACCTCGTCAGGCGACGAGTACTCAATGA 2543 Query 80957 TTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGT 81016 | || ||||| | || || ||||| || || || |||| | |||||| ||||||| || Sbjct 2542 TCTCAGTGCAGAGGTTGGACGACTTGATGGTGCCGAGGTGCTGCTGGTTCGACTTGGAGT 2483 Query 81017 TGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGG 81076 || |||||||||||| |||| | || ||| ||||| ||| | || |||||| | Sbjct 2482 TGGCGGCGTCCTTGTAGAGCATGAAGGGACCACCAGTCTCAGTCTGAGCCTCGAGGATAG 2423 Query 81077 CGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGG 81136 || ||||| || | ||||||| |||||| ||||| ||| | | ||||| Sbjct 2422 CGAACCAAAGCTTCTGAGCCTTGATGGTCTTGCGACCCTTGCCCTCGCTCTCGTACTTCT 2363 Query 81137 CGTAA-GCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGG 81195 ||||| ||| | ||||||| | ||| | || | ||| | ||||||||| ||| Sbjct 2362 CGTAAAGCTGC-TCGAACTCCTCCGAGTGGACGTCGGCAAGGCCGGGGCACTCGGCGGGG 2304 Query 81196 CACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAG 81255 ||||| ||| ||||||| ||| ||| ||| ||||||||| ||| ||||||||| Sbjct 2303 CACATGAGGGTCCAGTCGCCGTCCGCCTCGACACGCTTCATGAAGAGGTCGGGGATCCAG 2244 Query 81256 AGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCG 81315 |||||| ||| ||||| ||| ||| |||||| | || ||||| ||| | ||| Sbjct 2243 AGGGCGTAGAAGAGGTCACGGGCACGCATCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCG 2184 Query 81316 AGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCG- 81374 || ||||| | || ||| || ||||| ||||| || || | ||| | | || ||| Sbjct 2183 AGGAAGTCGAAGACGTCGGCGTGCCAAGGCTCGAGGTAGATGGCAAAGGCACCGGGGCGC 2124 Query 81375 --ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATG 81432 ||| ||||||| ||||||||| ||||| || | | |||| | ||| || | | Sbjct 2123 TTGTTGCCGCCCTGGTCGACGTAACGAGCAGTGGCATCGTACGCACGGAGCATGGGAACG 2064 Query 81433 ATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTG 81492 ||||| | || | |||||| ||||| | || ||| |||||||| || | ||| | Sbjct 2063 ATACCGTTGGAGTAACCGTTGGTACCGGCAATGTACGAGCCCTTGGCACGGATGTTGTGG 2004 Query 81493 ATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCA 81552 || ||||| || || || | ||| || |||||||| || || | ||| || Sbjct 2003 ATGTGGAGACCAATACCGCCGGCAGTCTTGGAGATCTGAGCGCAGGTCTTGAGGGTGTCG 1944 Query 81553 TAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGG 81612 || || || || || || | |||||| | | | ||| || |||||||||| | Sbjct 1943 TAGATGCCATCAATCGAGTCGTCCTTCATGGCGACAAGGAAGCAAGATGACATCTGA--G 1886 Query 81613 CTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACA 81670 | | ||| || || ||||| || || || | ||||| |||| || || | |||| Sbjct 1885 CGTGAGGAGTACCAGCGTTGAAGAGGGTAGGCGAAGCGTGGGTGAAGTAGCGCTCCGACA 1826 Query 81671 TCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACAC 81730 | |||| |||||| || |||| || || | ||| ||||| ||||||| | |||| Sbjct 1825 TGAGGTTATAGGTCTCGATGACACGGTCGATGTTGTCGCCGTGGATACCGACGGACACAC 1766 Query 81731 GCATAAACATGTACTG-GGGCGTCTCG 81756 |||||| ||||| ||| ||||| |||| Sbjct 1765 GCATAAGCATGTGCTGCGGGCG-CTCG 1740 >seq252 Length=28045 Score = 159 bits (176), Expect = 4e-34 Identities = 305/446 (68%), Gaps = 4/446 (1%) Strand=Plus/Minus Query 31959 CAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATA 32018 || ||| |||||||| ||||| |||||||| |||||| ||||||||||| || || Sbjct 6216 CATGCGTTCCATTCCCTCGGTGGCCGACGGCCTAAAGCCTGGTCAGCGCAAGGTTATGTA 6157 Query 32019 CGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGT 32078 || |||| ||||| ||||| || || || ||||| || ||||| || ||||| Sbjct 6156 CGGCTGCTTCAAGCGTAACCTCAAGAAGGAGATTAAGGTCGCACAGCTTGGTGGTTACGT 6097 Query 32079 GGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCT 32138 | | ||| | |||||||| |||||||| || | | || ||| || || || Sbjct 6096 GTCCGAGAACACGGCCTACCACCACGGTGAACAGAGTTTGACGGCCACGATCGTTGGTCT 6037 Query 32139 TGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGG 32198 || ||||| ||||| || || ||| | ||||| |||||||| || ||||| || Sbjct 6036 GGCGCAGAAGTTTGTTGGCAGCAACAACATCAACTTGCTCGAGCCCAACGGTCAGTTCGG 5977 Query 32199 GACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACC--CGTCTC 32256 || || | || |||||||| ||||| ||| | |||||||| |||||| | ||| Sbjct 5976 TACGCGTATGCAGGGCGGCAAGGACGCTGCCAGCGCTCGTTACATTTTCACCAACACCTC 5917 Query 32257 GCACCTTCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTT 32316 | | | ||| ||| | ||| |||| ||||||| | | || | ||| | || Sbjct 5916 -CGCGAT-GACCCGCGCTGTGTTCCACCCAGCGGACGACCCACTTCTTACCTACCTTGTT 5859 Query 32317 GATGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTG 32376 || ||||| ||||| ||||||| | || |||| ||| |||||||||| | | Sbjct 5858 GAGGACGGCCAGCGTATCGAGCCCGAGTACTACTTGCCGACTGTTCCGATGATTCTCATC 5799 Query 32377 AACGGTGCAGAAGGCATCGGAACGGG 32402 |||||||| || || || || || || Sbjct 5798 AACGGTGCGGACGGTATTGGTACCGG 5773 >seq2686 Length=8065 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || ||||||||||| || || ||||| ||||| Sbjct 6789 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCC 6730 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || || |||||||||||||| || || || |||||| Sbjct 6729 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 6670 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| |||||||| | || ||||| | ||||| || Sbjct 6669 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCGGACTACAAC 6610 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || || | || ||||| ||||| Sbjct 6609 ATCCAGAAGGAGTCGACCCTCCACCTCGTTCTTCGCCTTCGTGGTGG 6563 >seq180 Length=11059 Score = 152 bits (168), Expect = 6e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || ||||||||||| || ||||| ||||| ||||| || | ||| | || | ||| Sbjct 10930 CTCACCGGCAAGACGATCACTCTCGAGGTCGAGTCGTCGGACACCATCGACAACGTCAAG 10871 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 | || || |||||||||||||| |||||||| |||||||||||||| || || || || Sbjct 10870 TCGAAGATCCAGGACAAGGAGGGTATTCCTCCCGACCAGCAGCGTCTCATCTTCGCGGGA 10811 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTT 27606 ||||| |||||||| | ||| || || | ||||| || |||| ||||| || || || Sbjct 10810 AAGCAGCTCGAGGACGGTCGCACGCTTTCGGACTACAACATCCAGAAGGAGTCTACGCTC 10751 Query 27607 CATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 || || ||| | |||||||| ||||| || Sbjct 10750 CACCTGGTCCTCCGTCTTCGTGGTGGCCA 10722 >seq2988 Length=9850 Score = 134 bits (148), Expect = 2e-26 Identities = 205/292 (70%), Gaps = 0/292 (0%) Strand=Plus/Minus Query 31959 CAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATA 32018 || ||| || || ||| || || |||||||||||||| ||||||||||| || || Sbjct 2342 CATGCGTTCGATCCCATCGGTTGCCGACGGCCTCAAGCCCGGTCAGCGCAAGGTCATGTA 2283 Query 32019 CGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGT 32078 || |||| ||||| || || || || || ||||| |||||||| || ||||| Sbjct 2282 CGGCTGCTTCAAGCGTAATCTCAAGAAGGAGATCAAGGTCGCGCAGCTCGGTGGTTACGT 2223 Query 32079 GGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCT 32138 | | ||| | ||||| || ||||||||||| | || | ||||||||| || Sbjct 2222 GTCCGAGAACACGGCGTACCACCACGGCGAACAGAGTCTGACTGCTACCATTGTCGGTCT 2163 Query 32139 TGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGG 32198 || ||||| ||||| || || ||| | ||||| |||||||| || ||||| || Sbjct 2162 CGCACAGAAGTTTGTGGGCAGCAACAACATCAACTTGCTCGAGCCCAACGGTCAGTTCGG 2103 Query 32199 GACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACC 32250 || || | ||||| ||||| ||||| ||| | |||||||| |||||| Sbjct 2102 TACGCGTATGCAGGGTGGAAAGGACGCTGCCAGCGCGCGTTACATTTTCACC 2051 >seq238 Length=11627 Score = 113 bits (124), Expect = 5e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 27427 CTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAG 27486 || ||||||||||| || || |||||||| ||||| || | ||| | || | ||| Sbjct 11424 CTCACCGGCAAGACCATCACCCTTGAGGTCGAGTCCTCGGACACCATCGACAACGTCAAG 11483 Query 27487 GCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGT 27546 | ||||| |||||||||||||| || ||||| |||||||||||||| || || || || Sbjct 11484 TCGAAAATCCAGGACAAGGAGGGTATCCCTCCCGACCAGCAGCGTCTTATCTTCGCGGGC 11543 Query 27547 AAGCAACTCGAGGATGATCGTACCCTAGCAGACTA 27581 ||||| |||||||| | || || || | ||||| Sbjct 11544 AAGCAGCTCGAGGACGGCCGCACTCTCTCGGACTA 11578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570283153420640