Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2686 176 1e-38 seq180 168 2e-36 seq238 118 2e-21 seq2414 87.8 4e-12 >seq2686 Length=8065 Score = 176 bits (194), Expect = 1e-38 Identities = 172/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || ||||| || || ||||| || |||||||| || |||| |||||| Sbjct 6568 ACGAAGGCGAAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGT 6627 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || ||||||||||| |||||||| || || || ||||| || || | || Sbjct 6628 GCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGGGGGATGCC 6687 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || ||||| ||||||||||| || || |||||||| Sbjct 6688 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCCACCTCGAG 6747 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| |||||||| ||||| || || | |||||| Sbjct 6748 GGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 6789 >seq180 Length=11059 Score = 168 bits (186), Expect = 2e-36 Identities = 158/201 (79%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| ||||| || || ||||| || |||||||| || |||| ||| || Sbjct 10730 ACGAAGACGGAGGACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGCGT 10789 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || |||||||| || |||||||| || || || ||||| ||||||| || Sbjct 10790 GCGACCGTCCTCGAGCTGCTTTCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGAATACC 10849 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || ||||| ||||||||||| || || |||||||| Sbjct 10850 CTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCCGACGACTCGACCTCGAG 10909 Query 211073 AGTGATCGTCTTTCCCGTGAG 211093 |||||||||||| || ||||| Sbjct 10910 AGTGATCGTCTTGCCGGTGAG 10930 >seq238 Length=11627 Score = 118 bits (130), Expect = 2e-21 Identities = 119/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998 || |||| || || | || || || ||||||||||| ||||||||||| || || ||| Sbjct 11578 TAGTCCGAGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATAAGACGCTGCTGG 11519 Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058 || ||||| | || |||||||||||||| || || ||||| ||||||||||| ||| Sbjct 11518 TCGGGAGGGATACCCTCCTTGTCCTGGATTTTCGACTTGACGTTGTCGATGGTGTCCGAG 11459 Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAG 211093 || ||||| || ||||| ||||| || ||||| Sbjct 11458 GACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAG 11424 >seq2414 Length=19474 Score = 87.8 bits (96), Expect = 4e-12 Identities = 183/268 (68%), Gaps = 6/268 (2%) Strand=Plus/Minus Query 178120 GGCATCTTTGTACGCAATGAAGGGCATTCCCACCTCAGCTTGAGCCACGAGAAT-GTGAT 178178 ||| || ||||| |||||||| || ||||| |||||| |||| || | || Sbjct 2478 GGCGTCCTTGTAGAGCATGAAGGGACCACCAGTCTCAGTCTGAGCCTCGAGGATAGCGAA 2419 Query 178179 GCCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGT 178238 |||||||| ||| || || ||||| | || || || |||||||||| | || Sbjct 2418 -CCAAAGCTTCTGAGCCTTGATGGTCTTGCGACCCTTGCCCTCGCTCTCGTACTTCTCGT 2360 Query 178239 AGAGCTCCTCGAATTCCGGTCCA--TAGACATCATCGAGACCGGGAGCCTCATTGGGGCA 178296 | |||| |||||| ||| ||| | ||| || | || ||||| ||| |||||| Sbjct 2359 AAAGCTGCTCGAACTCC--TCCGAGTGGACGTCGGCAAGGCCGGGGCACTCGGCGGGGCA 2302 Query 178297 GAAGAGACTCCACTGACCGTCTTCCTTCACTCGTTTCATGAAGAGGTCAGAGGTCCAGAT 178356 | ||| |||| | ||||| ||| || || |||||||||||||| | | |||||| Sbjct 2301 CATGAGGGTCCAGTCGCCGTCCGCCTCGACACGCTTCATGAAGAGGTCGGGGATCCAGAG 2242 Query 178357 GGCATAGAAAATCTCTCTGGCTCTCATC 178384 ||| ||||| | || | ||| | |||| Sbjct 2241 GGCGTAGAAGAGGTCACGGGCACGCATC 2214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159095237051030