Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25]
3,822 sequences; 31,278,289 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq2686 176 1e-38
seq180 168 2e-36
seq238 118 2e-21
seq2414 87.8 4e-12
>seq2686
Length=8065
Score = 176 bits (194), Expect = 1e-38
Identities = 172/222 (77%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | || || ||||| || || ||||| || |||||||| || |||| ||||||
Sbjct 6568 ACGAAGGCGAAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGT 6627
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || || || ||||||||||| |||||||| || || || ||||| || || | ||
Sbjct 6628 GCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGGGGGATGCC 6687
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||||||||| || ||||| ||||||||||| || || ||||||||
Sbjct 6688 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCCACCTCGAG 6747
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| ||||| |||||||| ||||| || || | ||||||
Sbjct 6748 GGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 6789
>seq180
Length=11059
Score = 168 bits (186), Expect = 2e-36
Identities = 158/201 (79%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952
|||||| | ||||| ||||| || || ||||| || |||||||| || |||| ||| ||
Sbjct 10730 ACGAAGACGGAGGACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGCGT 10789
Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| || || || |||||||| || |||||||| || || || ||||| ||||||| ||
Sbjct 10790 GCGACCGTCCTCGAGCTGCTTTCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGAATACC 10849
Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||||||||| || ||||| ||||||||||| || || ||||||||
Sbjct 10850 CTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCCGACGACTCGACCTCGAG 10909
Query 211073 AGTGATCGTCTTTCCCGTGAG 211093
|||||||||||| || |||||
Sbjct 10910 AGTGATCGTCTTGCCGGTGAG 10930
>seq238
Length=11627
Score = 118 bits (130), Expect = 2e-21
Identities = 119/155 (77%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 210939 TAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGG 210998
|| |||| || || | || || || ||||||||||| ||||||||||| || || |||
Sbjct 11578 TAGTCCGAGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATAAGACGCTGCTGG 11519
Query 210999 TCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAG 211058
|| ||||| | || |||||||||||||| || || ||||| ||||||||||| |||
Sbjct 11518 TCGGGAGGGATACCCTCCTTGTCCTGGATTTTCGACTTGACGTTGTCGATGGTGTCCGAG 11459
Query 211059 CTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAG 211093
|| ||||| || ||||| ||||| || |||||
Sbjct 11458 GACTCGACCTCAAGGGTGATGGTCTTGCCGGTGAG 11424
>seq2414
Length=19474
Score = 87.8 bits (96), Expect = 4e-12
Identities = 183/268 (68%), Gaps = 6/268 (2%)
Strand=Plus/Minus
Query 178120 GGCATCTTTGTACGCAATGAAGGGCATTCCCACCTCAGCTTGAGCCACGAGAAT-GTGAT 178178
||| || ||||| |||||||| || ||||| |||||| |||| || | ||
Sbjct 2478 GGCGTCCTTGTAGAGCATGAAGGGACCACCAGTCTCAGTCTGAGCCTCGAGGATAGCGAA 2419
Query 178179 GCCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGCTTTTCCTTCATTCTCGTACTTTTTGT 178238
|||||||| ||| || || ||||| | || || || |||||||||| | ||
Sbjct 2418 -CCAAAGCTTCTGAGCCTTGATGGTCTTGCGACCCTTGCCCTCGCTCTCGTACTTCTCGT 2360
Query 178239 AGAGCTCCTCGAATTCCGGTCCA--TAGACATCATCGAGACCGGGAGCCTCATTGGGGCA 178296
| |||| |||||| ||| ||| | ||| || | || ||||| ||| ||||||
Sbjct 2359 AAAGCTGCTCGAACTCC--TCCGAGTGGACGTCGGCAAGGCCGGGGCACTCGGCGGGGCA 2302
Query 178297 GAAGAGACTCCACTGACCGTCTTCCTTCACTCGTTTCATGAAGAGGTCAGAGGTCCAGAT 178356
| ||| |||| | ||||| ||| || || |||||||||||||| | | ||||||
Sbjct 2301 CATGAGGGTCCAGTCGCCGTCCGCCTCGACACGCTTCATGAAGAGGTCGGGGATCCAGAG 2242
Query 178357 GGCATAGAAAATCTCTCTGGCTCTCATC 178384
||| ||||| | || | ||| | ||||
Sbjct 2241 GGCGTAGAAGAGGTCACGGGCACGCATC 2214
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159095237051030
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |