Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2686 84.2 1e-11 >seq2686 Length=8065 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || || ||||| ||||| || || || | Sbjct 6789 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCC 6730 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || || || || Sbjct 6729 GACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAG 6670 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCA--CTTTAGGCGATTACA 23788 |||||| | || || || ||||| || || || |||| |||| |||| | || |||| Sbjct 6669 CAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGACGGCCGCACCCTTTCG--GACTACA 6612 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || || ||||| || Sbjct 6611 ACATCCAGAAGGAGTCGAC 6593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337993855301576