Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq2686 163 6e-35 seq180 163 6e-35 seq238 107 4e-18 seq252 102 2e-16 seq984 84.2 5e-11 >seq2686 Length=8065 Score = 163 bits (180), Expect = 6e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||||||||| |||||||| || || || | || || || |||||||||||||| | Sbjct 6562 ACCACCACGAAGGCGAAGAACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGA 6621 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| |||||||| ||||| || || || || || ||||| | ||| || ||||| || Sbjct 6622 AAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGGGG 6681 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || ||| | ||||| ||||| || | || || Sbjct 6682 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCCAC 6741 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| ||||| | ||||| ||||| |||||||| Sbjct 6742 CTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 6789 >seq180 Length=11059 Score = 163 bits (180), Expect = 6e-35 Identities = 158/203 (78%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||||| || || || ||||| || | ||| || || |||||||||||||| | | Sbjct 10725 CCACCACGAAGACGGAGGACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAA 10784 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 |||||||| || ||||| || || || || || ||||| | ||| || ||||| ||| Sbjct 10785 AGCGTGCGACCGTCCTCGAGCTGCTTTCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGA 10844 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 |||||||||||||| |||||||| | || ||| | ||||| |||||||| | ||||| Sbjct 10845 ATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCCGACGACTCGACC 10904 Query 283053 TCGAGAGTGATCGTCTTACCCGT 283075 ||||||||||||||||| || || Sbjct 10905 TCGAGAGTGATCGTCTTGCCGGT 10927 >seq238 Length=11627 Score = 107 bits (118), Expect = 4e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 282922 TGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTT 282981 ||||||| | || |||||||| ||||| || || || || || ||||| | ||| || | Sbjct 11580 TGTAGTCCGAGAGAGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATAAGACGCTGCT 11521 Query 282982 GGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCG 283041 |||| || |||||||||||||| ||||| || | || ||| | ||||| ||||||| Sbjct 11520 GGTCGGGAGGGATACCCTCCTTGTCCTGGATTTTCGACTTGACGTTGTCGATGGTGTCCG 11461 Query 283042 AAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 | | ||||| || || ||||| ||||| || || Sbjct 11460 AGGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 11427 >seq252 Length=28045 Score = 102 bits (112), Expect = 2e-16 Identities = 195/285 (68%), Gaps = 2/285 (1%) Strand=Plus/Plus Query 273777 TTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAAC 273836 || ||||||||||| | || || ||| ||||||||| || |||| | || ||| ||| Sbjct 5923 TTGGTGAAAATGTAACGAGCGCTGGCAGCGTCCTTGCCGCCCTGCATACGCGTACCGAAC 5982 Query 273837 TGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTC 273896 ||||| | |||| ||| |||| ||||||||||| || || | | ||| |||| | Sbjct 5983 TGACCGTTGGGCTCGAGCAAGTTGATGTTGTTGCTGCCAACAAACTTCTGCGCCAGACCA 6042 Query 273897 ACGATAGT-CCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATA 273955 ||||| || || | || | || |||||||| ||||| ||| |||| | || Sbjct 6043 ACGATCGTGGCCGTCAAACTCT-GTTCACCGTGGTGGTAGGCCGTGTTCTCGGACACGTA 6101 Query 273956 ACCACTGAACTGAGCAACCTTCACATCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAA 274015 ||||| | ||| || ||||| | || || | | ||| |||||||| | |||| Sbjct 6102 ACCACCAAGCTGTGCGACCTTAATCTCCTTCTTGAGGTTACGCTTGAAGCAGCCGTACAT 6161 Query 274016 CACCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGGAAT 274060 ||||| ||||| ||||| | || || | ||||| ||||| Sbjct 6162 AACCTTGCGCTGACCAGGCTTTAGGCCGTCGGCCACCGAGGGAAT 6206 >seq984 Length=2534 Score = 84.2 bits (92), Expect = 5e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 315650 TGTGACTAATCACCACCACCCCACCTCCGAAATTCTTAAGCGCCTCTGCCATGGCACCGA 315709 |||| | ||||| | ||| ||||| |||| |||||||| || | | | ||| ||| Sbjct 2286 TGTGTGTGATCACGAGCACACCACCCTCGAAGTTCTTAAGGGCGGCGGTAAGGGCGGCGA 2227 Query 315710 GACTCTCGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTGCC 315769 | ||||||||||| ||||||| ||||| || ||| ||| | |||||| | ||| Sbjct 2226 GCGACTCGCGGTCCAGGTAGTTGGTGGGCTCGTCGAGACAGATAATGTGGGGACGACGCC 2167 Query 315770 ATAGAGCGGCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATG 315825 | ||||| |||| ||||| ||| | || || ||||| || || || || ||| Sbjct 2166 ACGTGGCGGCACCGAGAACGACCTTGACCTTCTGGCCACCGGAGAGACCGCGCATG 2111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046687941835588