Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq2686 125 5e-24 seq180 111 1e-19 >seq2686 Length=8065 Score = 125 bits (138), Expect = 5e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || ||||| || || |||||| ||||||||||| || | || ||| |||| || Sbjct 6581 ACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCG 6640 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||| | ||||||||| || | || | || ||||| ||| Sbjct 6641 AGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGG 6700 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||||| || |||||||| | || || ||||| Sbjct 6701 ATCTTGGACTTGACGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTG 6760 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||||||||||||| |||||||| ||||| Sbjct 6761 CCCGTGAGGGTCTTGACGAAGATCTGCAT 6789 >seq180 Length=11059 Score = 111 bits (122), Expect = 1e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| ||||| |||||| ||||||||||| || | || ||| |||| || Sbjct 10743 ACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGCGTGCGACCGTCCTCG 10802 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| || || ||||| | ||||||||| || | ||| | ||| ||||| ||| Sbjct 10803 AGCTGCTTTCCCGCGAAGATGAGACGCTGCTGGTCGGGAGGAATACCCTCCTTGTCCTGG 10862 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 |||||| ||| | | | |||||||| | || || ||||| | || |||||||| Sbjct 10863 ATCTTCGACTTGACGTTGTCGATGGTGTCCGACGACTCGACCTCGAGAGTGATCGTCTTG 10922 Query 44309 CCCGTGAGG 44317 || |||||| Sbjct 10923 CCGGTGAGG 10931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359973631422174