Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Geotrichum_20fermentans_20[genbank_20GCA_5F002233575.1_202017-07-25] 3,822 sequences; 31,278,289 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2686 143 2e-29 seq180 111 1e-19 seq3434 87.8 2e-12 >seq2686 Length=8065 Score = 143 bits (158), Expect = 2e-29 Identities = 149/193 (77%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| ||||| || |||||||| |||| |||||||||||||| ||||| Sbjct 6598 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAA 6657 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 || || ||||| ||||| | ||| | || |||||||||| ||| || ||| ||| Sbjct 6658 GATGAGACGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTT-GACGT 6716 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | | |||||| |||||||||||| | || || || || ||||| || ||||| | Sbjct 6717 TGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTGA 6776 Query 41850 CGAAAATCTGCAT 41862 |||| |||||||| Sbjct 6777 CGAAGATCTGCAT 6789 >seq180 Length=11059 Score = 111 bits (122), Expect = 1e-19 Identities = 151/208 (73%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||| || ||||| ||||||||| ||||| ||||| || Sbjct 10724 GCCACCACGAAGACGGAGGACCAGGTGGAGCGTAGACTCCTTCTGGATGTTGTAGTCCGA 10783 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| |||| ||||||||||| || ||||| || || ||||| ||||| | || Sbjct 10784 AAGCGTGCGACCGTCCTCGAGCTGCTTTCCCGCGAAGATGAGACGCTGCTGGTCGGGAGG 10843 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || | |||||||||| ||| || ||| ||| | | | ||||| |||||| | Sbjct 10844 AATACCCTCCTTGTCCTGGATCTTCGACTT-GACGTTGTCGATGGTGTCCGACGACTCGA 10902 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAG 41841 |||| | || ||||| || || || || Sbjct 10903 CCTCGAGAGTGATCGTCTTGCCGGTGAG 10930 >seq3434 Length=7857 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 85800 CGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGTGGGCGCCGGGGTC 85859 |||||||| ||||| || || ||||| |||||| |||||| ||||||||| ||| Sbjct 7323 CGTATCGCTCCTCGCTCGGGTCTCGCGGCGAAGCACTCGATCGACACGGGCGCCGGCGTC 7264 Query 85860 ATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCACGGCGA 85912 |||||||||||||||||||| | |||| | | || |||||| | ||||| Sbjct 7263 ATCGACGCCGACTACCGCGGCGAAGTCAAGGTGCTCCTGTTCAACTATGGCGA 7211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462281913426400