Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20opuntiae_20[genbank_20GCA_5F001749795.1_202016-09- 27] 17 sequences; 8,831,957 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2 111 2e-19 seq14 102 8e-17 >seq2 Length=1277918 Score = 111 bits (122), Expect = 2e-19 Identities = 290/443 (65%), Gaps = 6/443 (1%) Strand=Plus/Minus Query 116760 TGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTC 116819 ||||||| || || ||| || || || ||||| ||||| |||| || |||| || Sbjct 605992 TGGCCTTCTTTGCTGCCTCTGATGGTATTGTCAAYGAGAACTTGGTTGAAAATTTCTCTG 605933 Query 116820 AGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACG 116879 || || || | | || || ||| ||||| || || || ||| ||||| ||| Sbjct 605932 CTGARGTYCAAATTCCAGAAGCCAAGTGTTTCTAYGGTTTCCAAATCATGATGGAAAACA 605873 Query 116880 TGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCGGAGGAGA 116936 | ||||| |||| || || | | ||||| ||| | | | || ||| | Sbjct 605872 TCCACTCAGAAACCTACTCCTTATTGTTGGACACATACATCAAGGACMCTAAGGAAAACG 605813 Query 116937 AGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGG 116996 | || || || || ||||| || || || || |||| || |||||||| |||| Sbjct 605812 AATTC---TTATTCAATGCCATAGAAACCATTCCTGAAATCAAGGAAAAGGCCGAATGGG 605756 Query 116997 CGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGG 117056 | | | |||||| | || || ||| || | || | ||||| || ||||| | Sbjct 605755 CCATCAGATGGATCCAAGACAAGGACGCCCTGTTTGCTGAAAGACTGGTTGCTTTCGCTG 605696 Query 117057 CCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCG 117116 | || ||||| |||||||| || || || || || || || ||| | ||||| | Sbjct 605695 CTGTTGAGGGTGTCTTCTTCTCCGGATCATTTGCTGCTATCTTCTGGTTRAAGAAGAAAG 605636 Query 117117 GCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATT 117176 | | ||||| || |||| ||| ||||||| | |||| ||| ||||| ||| | || Sbjct 605635 GTTTGATGCCTGGTTTGACCTTCTCCAACGAGTTGATCTGCAGAGACGAAGGTTTACACA 605576 Query 117177 GCGACTTTGCCTGTTTGCTGTTC 117199 ||||||||||||||| ||||| Sbjct 605575 CTGACTTTGCCTGTTTGTTGTTC 605553 >seq14 Length=450723 Score = 102 bits (112), Expect = 8e-17 Identities = 166/238 (70%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 40683 CCGA-AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCG 40741 |||| ||||||||||| ||||||||||| || || || || ||||| || | || |||| Sbjct 422324 CCGACAAAATGCAAATTTTCGTAAAAACTCTAACTGGTAAGACCATTACTTTGGAGGTCG 422265 Query 40742 AAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCG 40801 || | | || | | | | | |||| ||||| | |||||||| || ||||| Sbjct 422264 AATCTTCTGATTCCATCGACATTGTTAAGGCTAAAATCCAAGACAAAGAAGGTATCCCAC 422205 Query 40802 CGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 40861 | || || ||| || | |||| ||| || || || | || |||| | || | | Sbjct 422204 CTGAGCAACAAAGATTAATCTTCGCTGGTAAGCAATTAGAAGACGGTAGAACTTTATCTG 422145 Query 40862 ACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGG 40919 ||||||||||||| ||||| |||| |||||| |||| ||| | || || || || || Sbjct 422144 ACTACAACATCCAAAAGGAATCCACCCTGCATTTAGTCTTGAGATTAAGAGGTGGTGG 422087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219090515920