Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20opuntiae_20[genbank_20GCA_5F001749795.1_202016-09- 27] 17 sequences; 8,831,957 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq2 174 1e-38 >seq2 Length=1277918 Score = 174 bits (192), Expect = 1e-38 Identities = 541/831 (65%), Gaps = 23/831 (3%) Strand=Plus/Plus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 ||||| || ||| ||||||||||||||||| || || || || |||| || || ||| Sbjct 605272 TTTTGGTAATCAGATACTCTCTTTTCAAAGAAGTTGGTCTTACCAGCTAAGGATATGTTT 605331 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAAT--AGTATTTATCGCATCCCAATTCCAACA 16061 ||||| || ||||| ||||| | |||| | || || ||||| ||||| | | | Sbjct 605332 TCCATGAAGTCAAATGGATTGGT--AACATTGAAGATCTTTTCGCAACCCAAGGCGACTA 605389 Query 16062 ATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTA 16121 | |||||||| || || ||||| | || || ||||| || ||| ||||| || | | Sbjct 605390 ACAATCTATCAGCAACGAATTCAACGTATTGGTTCATCAAGTCAGCATTCATACCCAACA 605449 Query 16122 ATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTC---AATGA 16178 | ||| || || || || | || | | ||||| || | ||| ||||| ||||| Sbjct 605450 AGGCAACTGGAATGGCATCAATGAAGTATCTCTTTTCRATTTCAACAGCTTCTGAAATGA 605509 Query 16179 TTATATCTCTTACTACACTATTT--AAC-GGAGGGTTTAATAAGTGTTTAAACATTATAC 16235 | ||| | ||| | ||| | | || ||| ||||| |||| | || Sbjct 605510 T------TCTYTCAACAATCTTTGGATCTGGCTTGTTCTTCAAGTGRGAGAACAACAAAC 605563 Query 16236 AAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGAC 16295 | ||||| ||| || || |||||||| || | || |||||||| || || || | || Sbjct 605564 AGGCAAAGTCAGTGTGTAAACCTTCGTCTCTGCAGATCAACTCGTTGGAGAAGGTCAAAC 605623 Query 16296 CTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATA 16355 | ||||| | ||| || || | ||| || ||||| |||||||| || || ||||| | Sbjct 605624 CAGGCATCAAACCTTTCTTCTTYAACCAGAAGATAGCAGCAAATGATCCGGAGAAGAAGA 605683 Query 16356 TACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttcta 16415 ||| ||||| || || || ||||||| || ||| | || | || || | Sbjct 605684 CACCCTCAACAGCAGCGAAAGCAACCAGTCTTTCAGCAAACAGGGCGTCCTTGTCTTGGA 605743 Query 16416 tccattttttagcccaatttg-ctttttgtttAACACAGTTCATGTTCTCTATTGCATTA 16474 ||||| | | ||||| | | ||||| || | ||| ||| | ||||| ||||| Sbjct 605744 TCCATCTGATGGCCCATTCGGCCTTTTCCTTGATTTCAG-GAATGGTTTCTATGGCATTG 605802 Query 16475 AATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATT 16534 ||||| | | ||||| || || || || || || | | ||| || || Sbjct 605803 AATAAGAATTCGTTTTCCTTAGKGTCCTTGATGTATGTGTCCAACAATAAGGAGTAGGTT 605862 Query 16535 TCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATT 16594 ||||| || || || ||||| || || ||||| || || || | ||||| | ||| Sbjct 605863 TCTGAGTGGATGTTTTCCATCATGATTTGGAAACCRTAGAAACACTTGGCTTCTGGAATT 605922 Query 16595 TGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCA 16654 || || |||| | || |||| | ||||| || || || || ||||| || ||| Sbjct 605923 TGRACYTCAGCAGAGAAATTTTCAACCAAGTTCTCRTTGACAATACCATCAGAGGCAGCA 605982 Query 16655 AAAAACG-CAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGT---TTTAACCA 16710 || || | ||| | | |||||| | ||||||| || | | || ||| Sbjct 605983 AAGAAGGCCAAMACTCTR-GAAATAAAGAATCTTTCGTTTTCATTCATTCTGTTGTTCCA 606041 Query 16711 GTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGC 16761 |||| ||||| || || ||||| | ||||| | ||||| |||||||| Sbjct 606042 GTCATGTAAATCCTTGGACAAATCAATTTCTTCAGCTGTCCAGAAAGAAGC 606092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511901716200