Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20opuntiae_20[genbank_20GCA_5F001749795.1_202016-09- 27] 17 sequences; 8,831,957 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2 212 6e-50 seq11 188 7e-43 >seq2 Length=1277918 Score = 212 bits (234), Expect = 6e-50 Identities = 585/887 (66%), Gaps = 40/887 (5%) Strand=Plus/Plus Query 11338 CTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATA 11397 |||||| || ||| |||| ||| || || || |||||||| ||| ||||| | Sbjct 605271 CTTTTGGTAATCAGATACTCTCTTTTCAAAGAAGTTGGTCTTACCAGCTAAGGATATGTT 605330 Query 11398 CTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAA 11457 ||||| ||| ||| ||||| |||||||||| ||||| ||||| || | ||| Sbjct 605331 TTCCATGAAGTCAAATGGATTGGTAACATTGAAGATCTTTTCGCAACCCAAGGCGACTAA 605390 Query 11458 TAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAG 11517 |||||||| || |||||||| | || || ||| || | ||||||||| | | Sbjct 605391 CAATCTATCAGCAACGAATTCAACGTATTGGTTCATCAAGTCAGCATTCATACCCAACAA 605450 Query 11518 ATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATC---AATGAT 11574 | || ||||| ||| | | || | |||||| || | ||| || || |||||| Sbjct 605451 GGCAACTGGAATGGCATCAATGAAGTATCTCTTTTCRATTTCAACAGCTTCTGAAATGAT 605510 Query 11575 TAT--CGACGTTATAACTTCCTTAGATGGTGGATGTAAT--AAATGTTTAAACATTAAAC 11630 | | | || || || || ||| | ||| | || || |||| |||| Sbjct 605511 TCTYTCAAC-----AA--TCTTTGGATCTGGCTTGTTCTTCAAGTGRGAGAACAACAAAC 605563 Query 11631 ACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATC 11690 | ||||| ||| ||||||||||||||||| | || | || || || || || || | Sbjct 605564 AGGCAAAGTCAGTGTGTAAACCTTCGTCTCTGCAGATCAACTCGTTGGAGAAGGTCAAAC 605623 Query 11691 CGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATA 11750 | |||||||| ||| || || | ||| || |||||||||||||| || || ||||| | Sbjct 605624 CAGGCATCAAACCTTTCTTCTTYAACCAGAAGATAGCAGCAAATGATCCGGAGAAGAAGA 605683 Query 11751 TTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATA------CCTTGTTGCTAG 11804 ||||| ||||| || || || || | |||||| || | | |||||| || | Sbjct 605684 CACCCTCAACAGCAGCGAAAGCAACCAGTCTTTCAGCAAACAGGGCGTCCTTGT--CTTG 605741 Query 11805 ATATCCATTTTCTGGCCCAATCAGC--TTTCTTT--TTTACGCATTCCATTGTTTCTATA 11860 |||||| | ||||||| || || |||| || ||| | | || |||||||| Sbjct 605742 -GATCCATCTGATGGCCCATTCGGCCTTTTCCTTGATTTCAGGA----ATGGTTTCTATG 605796 Query 11861 GCGTTAAATAAATGCATT--TTTTCTATATTATCTCTTACATATGTATCTATTAATAAAC 11918 || || ||||| | ||| ||||| || || | | ||||| || | ||||| Sbjct 605797 GCATTGAATAA--GAATTCGTTTTCCTTAGKGTCCTTGATGTATGTGTCCAACAATAAGG 605854 Query 11919 TATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCT 11978 || ||||||| || || |||||||| ||||| || || |||||||| || | Sbjct 605855 AGTAGGTTTCTGAGTGGATGTTTTCCATCATGATTTGGAAACCRTAGAAACACTTGGCTT 605914 Query 11979 CTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCAC 12038 ||| | || || || || | || |||| | || ||||| || |||||||||||| Sbjct 605915 CTGGAATTTGRACYTCAGCAGAGAAATTTTCAACCAAGTTCTCRTTGACAATACCATCAG 605974 Query 12039 TAGATGCAAAAAATGCTAGTA-TATGTTTTATAAAGTATTTTTCGTCTTTAGTTAAT--- 12094 | ||||| || || | | | | |||||| || |||||| || | | | | Sbjct 605975 AGGCAGCAAAGAAGGCCAAMACTCTR-GAAATAAAGAATCTTTCGTTTTCATTCATTCTG 606033 Query 12095 TTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCC 12154 || | ||| |||| |||||| || || ||||| | ||||||| | ||||| ||| || Sbjct 606034 TTGTTCCAGTCATGTAAATCCTTGGACAAATCAATTTCTTCAGCTGTCCAGAAAGAAGCT 606093 Query 12155 ACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAA 12201 | | | ||||| || ||| || ||| | |||| || ||||| Sbjct 606094 TCGGCTCTCTTATARGCTTCCCAAATTTCAGGGAACTTGATTGGGAA 606140 >seq11 Length=1501259 Score = 188 bits (208), Expect = 7e-43 Identities = 408/609 (67%), Gaps = 4/609 (1%) Strand=Plus/Minus Query 38025 CATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTT 38084 ||| || ||||| || | ||| | || | ||||| ||| ||| ||| |||||| || Sbjct 717477 CATGAACAAATCTGGAATCCAAAGRGCTGGGAATAARTCTCTGGCTCTGATTTCTTCTTT 717418 Query 38085 CCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATA 38144 || |||||||| | | | ||||| || ||||| | |||||||||||| | || Sbjct 717417 ACCGTGGTTCTTTCTGATGTCAATGAAATCAAAGATATCTGAGTGCCATGGTTCCAAGTA 717358 Query 38145 AATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATT 38204 | | | || |||||||| || | ||| || |||| || |||||| | ||||| || Sbjct 717357 CAAGGCAAAGGCACCTGGTCTCTTGTTACCACCTTGATCAACATATCTGGCGGTGTTGTT 717298 Query 38205 ATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATAAGT 38264 | | ||| | |||||| | | |||||| || | ||||| |||| | || |||| Sbjct 717297 GAAGACTCTGACCATAGGAATCAAACCATTGGAAGTACCGTTGGTACCTGCAATGTAAGA 717238 Query 38265 ACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATATTAA 38324 ||| | | || || || || ||| || || ||||| ||| || || ||| Sbjct 717237 ACCAGTGGATCTGATGTTGTGGATGTGCAAACCAATACCACCAGCAGTCTTGGAGATTTG 717178 Query 38325 AGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAGTAT 38384 ||| |||| || || || || | ||||| || || ||| ||||| |||| || | Sbjct 717177 AGCACATTCCTTCAAGGTGTCGTAGATACCGTCAATGGAGTCGTCCTTCATTGATACCAA 717118 Query 38385 AAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATG 38444 |||||| ||||||||||| |||||| ||||| || || || || ||||| || || Sbjct 717117 GAAACAAGAGGACATTTGAGGTCTTGGAGTACCGGCATTGAACAAAGTTGGAGAGGCGTG 717058 Query 38445 TATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCC 38504 |||| || ||| |||| | || || ||||| || || | || || | | || Sbjct 717057 GGTGAAGTATCTTTGAGACATCAAGTTGTAAGTTTCAATGACTTTGTCGATGTTTTCACC 716998 Query 38505 GTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATTATT 38564 ||||||||| | || || ||||| | || ||||| |||||||| | || ||| || Sbjct 716997 GTGAATACCAACAGCAACTCTCATGATCAAGTGTTGCGGTCTTTCAACGATCTTACCGTT 716938 Query 38565 CTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATA--TGAATAA 38622 || | |||||| ||| |||| || || || | ||||| || | || ||| | Sbjct 716937 GATCTTCAATAGATAAGATCTTTCCAAGGTCTTGAAACCAAAGTAGTTGTAGTTGA--AG 716880 Query 38623 TCTCTATCG 38631 ||||||||| Sbjct 716879 TCTCTATCG 716871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524700438480