Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20opuntiae_20[genbank_20GCA_5F001749795.1_202016-09- 27] 17 sequences; 8,831,957 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2 188 6e-43 >seq2 Length=1277918 Score = 188 bits (208), Expect = 6e-43 Identities = 551/834 (66%), Gaps = 29/834 (3%) Strand=Plus/Plus Query 12875 ACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAAA 12934 ||||| |||||||| ||||| || || || |||| || || |||||||| || || || Sbjct 605287 ACTCTCTTTTCAAAGAAGTTGGTCTTACCAGCTAAGGATATGTTTTCCATGAAGTCAAAT 605346 Query 12935 GGATTTTTCGAACAAT--AGTATTTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAA 12992 ||||| | |||| | || |||| || || || | | ||||||||| ||||||| Sbjct 605347 GGATTGGT--AACATTGAAGATCTTTTCGCAACCCAAGGCGACTAACAATCTATCAGCAA 605404 Query 12993 CAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATAG 13052 | || || | ||| || ||||| || ||| ||||| || | || || || || | Sbjct 605405 CGAATTCAACGTATTGGTTCATCAAGTCAGCATTCATACCCAACAAGGCAACTGGAATGG 605464 Query 13053 CTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTCTTATTACGT 13112 | || | || | | ||||| || ||||| ||||| || || ||| | | || Sbjct 605465 CATCAATGAAGTATCTCTTTTCRATTTCAACAGCTTCTGAAATGAT-TCTYTCA--ACAA 605521 Query 13113 TCTCTAATGGAG--GATTTGAT----AGATGCTTAAACATCATACATGCAAAATCACAGT 13166 ||| | ||| | ||| | | || |||| || ||| ||||| ||| || Sbjct 605522 TCTTT---GGATCTGGCTTGTTCTTCAAGTGRGAGAACAACAAACAGGCAAAGTCAGTGT 605578 Query 13167 GCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCAT-AAGCCCT 13225 | || ||||| ||||| | || | |||||| || || || | ||| ||||| || || | Sbjct 605579 GTAAACCTTCGTCTCTGCAGATCAACTCGTTGGAGAAGGTCAAACCAGGCATCAAACCTT 605638 Query 13226 CGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCT 13285 || || || ||| || ||||||||||| || || || || || | || ||||| || Sbjct 605639 TCTTCTTYAA-CCAGAAGATAGCAGCAAATGATCCGGAGAAGAAGACACCCTCAACAGCA 605697 Query 13286 GCAAACGCTATCAACCTTTCACCATAC-GTACTATTTTTACTCTCTATCCACTTTCTGGC 13344 || || || | || |||||| || || | | || || | ||||| | |||| Sbjct 605698 GCGAAAGCAACCAGTCTTTCAGCAAACAGGGCGTCCTTGTCT-TGGATCCATCTGATGGC 605756 Query 13345 CCAGTTTGCTTTTTGTTTAACG-CAGTTCATATTTTCTATTGCGTTAAATAAATAAtttt 13403 ||| | || |||| || | ||| || ||||||| || || ||||| | | | Sbjct 605757 CCATTCGGCCTTTTCCTTGATTTCAGGA-ATGGTTTCTATGGCATTGAATAAGAATTCGT 605815 Query 13404 tttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATAT 13463 |||||||| ||| || || || || | ||||||| || ||||||| || || | Sbjct 605816 TTTCCTTAGKGTCCTTGATGTATGTGTCCAACAATAAGGAGTAGGTTTCTGAGTGGATGT 605875 Query 13464 TTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGAG 13522 |||||||| ||||||||||| || ||||| | || |||| | || || || | || Sbjct 605876 TTTCCATCATGATTTGGAAACCRTAGAAACACTTGGCTTCTGGAATTTGRACYTCAGCAG 605935 Query 13523 TAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaG-CAAG 13581 |||| |||| | ||||| || || || || || ||| |||||||| || | ||| Sbjct 605936 AGAAAT-TTTCAACCAAGTTCTCRTTGACAATACCATCAGAGGCAGCAAAGAAGGCCAAM 605994 Query 13582 TATGTGCTTAATAAAttttttttCGTTTTCTGACA---ACTTTAACCAATCTGGAAAATC 13638 | | |||||| | |||||||||| || || ||| || | ||||| Sbjct 605995 ACTCTR-GAAATAAAGAATCTTTCGTTTTCATTCATTCTGTTGTTCCAGTCATGTAAATC 606053 Query 13639 TTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATA 13692 || || ||||| | || ||| | ||||| |||||||| | || ||||||| Sbjct 606054 CTTGGACAAATCAATTTCTTCAGCTGTCCAGAAAGAAGCTTCGGCTCTCTTATA 606107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430982310705834