Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20opuntiae_20[genbank_20GCA_5F001749795.1_202016-09- 27] 17 sequences; 8,831,957 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq14 170 4e-37 seq2 159 8e-34 seq16 150 4e-31 seq1 138 3e-27 >seq14 Length=450723 Score = 170 bits (188), Expect = 4e-37 Identities = 177/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | |||| ||| | || ||||| || || || || ||||||||| Sbjct 422090 CCACCTCTTAATCTCAAGACTAAATGCAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAT 422149 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||||||||||||||||| ||| || ||||| || |||| || ||||| ||||| || Sbjct 422150 AAAGTTCTACCGTCTTCTAATTGCTTACCAGCGAAGATTAATCTTTGTTGCTCAGGTGGG 422209 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || |||||||| || || || || || || ||| | || | || ||| || ||| ||| Sbjct 422210 ATACCTTCTTTGTCTTGGATTTTAGCCTTAACAATGTCGATGGAATCAGAAGATTCGACC 422269 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGT 104564 || | ||||| ||||||||||| || |||||||| || || |||||||||| Sbjct 422270 TCCAAAGTAATGGTCTTACCAGTTAGAGTTTTTACGAAAATTTGCATTTTGT 422321 >seq2 Length=1277918 Score = 159 bits (176), Expect = 8e-34 Identities = 367/547 (67%), Gaps = 10/547 (2%) Strand=Plus/Minus Query 268754 GCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGG 268813 |||| |||||||| ||||| | |||||| | ||| |||| | || ||| || ||| Sbjct 606098 GCCGAAGCTTCTTTCTGGACAGCTGAAGAAATTGATTTGTCCAAGGATTTACATGACTGG 606039 Query 268814 AAAAATTTAA--AACCAGAA-GAAAGAAGATTTATATCTTATATTCTTG-CGTTTTTTGC 268869 || || || || | || |||||| ||||| || | | | ||| | || ||||| Sbjct 606038 AACAACAGAATGAATGAAAACGAAAGATTCTTTATTTCY-AGAGTKTTGGCCTTCTTTGC 605980 Query 268870 AGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGAT 268929 | ||||||||| || || || || | || || || |||| | || || || || Sbjct 605979 TGCCTCTGATGGTATTGTCAAYGAGAACTTGGTTGAAAATTTCTCTGCTGARGTYCAAAT 605920 Query 268930 TCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGAT 268989 ||| ||||||| ||||| || || ||||| || || ||||| || || ||||| | Sbjct 605919 TCCAGAAGCCAAGTGTTTCTAYGGTTTCCAAATCATGATGGAAAACATCCACTCAGAAAC 605860 Query 268990 GTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTC 269049 ||| |||| | || || || || | || || ||||| || |||| Sbjct 605859 CTACTCCTTATTGTTGGACACATACATCAAGGACMCTAAGGAAAACGAATTCTTATTCAA 605800 Query 269050 TTCTATGAGAACTATGGACTGTG-TGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAA 269108 | | || ||| || ||| | | |||| | |||||||| | | |||||| Sbjct 605799 TGCCATAGAAACCATTC-CTGAAATCAAGGAAAAGGCCGAATGGGCCATCAGATGGATCC 605741 Query 269109 ACGATAGCG-CGCCTTAC--GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATAT 269165 | || | | |||| | | ||||| | |||||||| || ||||| || ||| | | Sbjct 605740 AAGACAAGGACGCCCTGTTTGCTGAAAGACTGGTTGCTTTCGCTGCTGTTGAGGGTGTCT 605681 Query 269166 TCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGAT 269225 |||| || || || ||||| |||||||| ||||| ||||| | ||| | ||||| || | Sbjct 605680 TCTTCTCCGGATCATTTGCTGCTATCTTCTGGTTRAAGAAGAAAGGTTTGATGCCTGGTT 605621 Query 269226 TAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTT 269285 | || ||||| ||||| ||||| |||| ||||||||||||||| ||||| || |||| Sbjct 605620 TGACCTTCTCCAACGAGTTGATCTGCAGAGACGAAGGTTTACACACTGACTTTGCCTGTT 605561 Query 269286 TATTATT 269292 | || || Sbjct 605560 TGTTGTT 605554 >seq16 Length=958289 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | |||| ||| | ||| ||||| || || || || ||||||||| Sbjct 204394 CCACCTCTTAATCTCAAAACTAAATGGAGTGTTGATTCCTTTTGGATGTTGTAGTCAGAT 204335 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | |||||||||||||| | ||| || |||||||| || | || ||||||||||| || Sbjct 204334 AAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGATCAGGTGGA 204275 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| ||||| || || || | || ||| || | || || |||| ||| || Sbjct 204274 ATACCTTCCTTATCTTGGATTTTAGACTTAACAGCATCAATGGAGTCACTAGATTCAACT 204215 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 |||| || || |||||||| || | |||||| ||||| || |||||| Sbjct 204214 TCTAAGGTGATGGTCTTACCGGTTAATGTTTTAACAAAAATTTGCATT 204167 >seq1 Length=232064 Score = 138 bits (152), Expect = 3e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || || |||| ||| ||||| ||||| || || || || || ||||| Sbjct 90784 CCACCTCTTAATCTTAGGACTAAATGCAATGTTGATTCCTTTTGGATGTTGTARTCAGAC 90725 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | |||||| || ||||||| ||| || |||| || |||| || ||||||||||| || Sbjct 90724 AAAGTTCTGCCATCTTCTAATTGCTTACCAGAGAAGATTAATCTTTGTTGATCAGGTGGA 90665 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| || || || ||||| || || ||| || | ||| ||| ||| ||| || Sbjct 90664 ATACCTTCCTTGTCTTGGATCTTGGCCTTGACAGCGTCGATGGTTTCGGTAGATTCGACT 90605 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 || | ||||| |||||||| || | || || ||||| Sbjct 90604 TCCAAAGTAATGGTCTTACCGGTTAAGGTCTTGACAAA 90567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398149211036