Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20opuntiae_20[genbank_20GCA_5F001749795.1_202016-09- 27] 17 sequences; 8,831,957 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2 159 4e-34 >seq2 Length=1277918 Score = 159 bits (176), Expect = 4e-34 Identities = 585/898 (65%), Gaps = 21/898 (2%) Strand=Plus/Plus Query 92791 ATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCC 92850 |||||||| |||||||| || ||| | ||||||||||| || ||||| || | Sbjct 605260 ATAACACCTGCCTTTTGGTAATCAGATACTCTCTTTTCAAAGAAGTTGGTCTTACCAGCT 605319 Query 92851 AAAGATATCGAATTCACT--AGTGAT-TGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 || ||||| | ||| | ||| | |||||| | | || | |||||| | Sbjct 605320 AAGGATAT-GTTTTCCATGAAGTCAAATGGATTGGTAACATTGAAGATCTTTTCGCAACC 605378 Query 92908 CAACTCGTACAATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATT 92967 ||| || || ||||||||||| || ||||| | ||| || |||||| ||| ||| Sbjct 605379 CAAGGCGACTAACAATCTATCAGCAACGAATTCAACGTATTGGTTCATCAAGTCAGCATT 605438 Query 92968 CATTCCTAG-AAGACGTACAGGTAGAGCGTCGGTCAAGAAA-TCTTTCTCGATTACAACG 93025 ||| || | ||| | || || | || || | ||| | ||||| || ||| |||| Sbjct 605439 CATACCCAACAAGGCA-ACTGGAATGGCATCAATGAAGTATCTCTTT-TCRATTTCAACA 605496 Query 93026 GCTTCTTTCAAGATTTCTATTACTCTACTATTTGG---TGGTTT-TTGTACGACATAATT 93081 |||||| | |||| || | | | | ||||| ||| || || | | | | Sbjct 605497 GCTTCTGAAATGATT-CTYTCAAC--AATCTTTGGATCTGGCTTGTTCTTCAAG-TGRGA 605552 Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 | ||| || || |||||||| || |||||||||||||||| | |||||||| ||| Sbjct 605553 GAACAACAAACAGGCAAAGTCAGTGTGTAAACCTTCGTCTCTGCAGATCAACTCGTTGGA 605612 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACC 93201 ||| || ||||| || | || ||| ||||| | ||| || || | |||||| || Sbjct 605613 GAAGGTCAAACCAGGCATCAAACCTTTCTTCTTYAACCAGAAGATAGCAGCAAATGATCC 605672 Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGA 93261 || || || | ||| || || || || || || || | | ||| ||||| ||| Sbjct 605673 GGAGAAGAAGACACCCTCAACAGCAGCGAAAGCAACCAGTCTTTCAGCAAACAGGGCGTC 605732 Query 93262 ATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTC 93321 || ||||||| | | ||||| ||||| |||| ||| || ||| | ||||| Sbjct 605733 CTTGTCTTGGATCCATCTGATGGCCCATTCGGCCTTTTCCTTGATTTCAGGAATGGTTTC 605792 Query 93322 GATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAG 93381 || || || |||| | | || || | | || |||||||| || | || | Sbjct 605793 TATGGCATTGAATAAGAATTCGTTTTCCTTAGKGTCCTTGATGTATGTGTCCAACAATAA 605852 Query 93382 AGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGC 93441 || || |||| || |||| || ||||| |||||||| || |||||||| | || Sbjct 605853 GGAGTAGGTTTCTGAGTGGATGTTTTCCATCATGATTTGGAAACCRTAGAAACACTTGGC 605912 Query 93442 TTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATC 93501 ||| | || || || || ||| || | || || | || || ||||| |||||||| Sbjct 605913 TTCTGGAATTTGRACYTCAGCAGAGAAATTTTCAACCAAGTTCTCRTTGACAATACCATC 605972 Query 93502 GGATGCTGCaaaaaaaGCCAATA-TAT-GCTTTATAAAATGTTTC-TCATCA-TCTTTAA 93557 || || ||||| || ||||| | | | | || | ||| |||| | ||| || || Sbjct 605973 AGAGGCAGCAAAGAAGGCCAAMACTCTRGAAATAAAGAATCTTTCGTTTTCATTCATTCT 606032 Query 93558 GCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATG 93617 | || | ||| || || ||| || || | ||| | |||||| | ||||| || || | Sbjct 606033 G-TTGTTCCAGTCATGTAAATCCTTGGACAAATCAATTTCTTCAGCTGTCCAGAAAGAAG 606091 Query 93618 CTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAA 93675 |||| ||| | || || ||||| || || | | | ||||| || | |||||| Sbjct 606092 CTTCGGCTCTCTTATARGCTTCCCAAATTTCAGGGAACTTGATTGGGAACAAGACAAA 606149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860681667080