Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20opuntiae_20[genbank_20GCA_5F001749795.1_202016-09- 27] 17 sequences; 8,831,957 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2 271 9e-68 seq11 242 4e-59 >seq2 Length=1277918 Score = 271 bits (300), Expect = 9e-68 Identities = 608/903 (67%), Gaps = 23/903 (3%) Strand=Plus/Plus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 ||||| || || | ||||| ||||||||||| || || || || |||| ||||| | Sbjct 605272 TTTTGGTAATCAGATACTCTCTTTTCAAAGAAGTTGGTCTTACCAGCTAAGGATATGTTT 605331 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 ||||| || ||||||||||| | ||||| | || |||| | | || || | | || Sbjct 605332 TCCATGAAGTCAAATGGATTGGTAACATTGAAGATCTTTTCGCAACCCAAGGCGACTAAC 605391 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 | |||||| || || |||| || ||| |||||||| ||| |||||| || | || Sbjct 605392 AATCTATCAGCAACGAATTCAACGTATTGGTTCATCAAGTCAGCATTCATACCCAACAAG 605451 Query 18850 TTAACAGGTAGTGCATCTGT-AAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 ||| || | ||||| | ||| | |||| ||| || | || || ||||| || || Sbjct 605452 GCAACTGGAATGGCATCAATGAAGTATCTCTT-TTCRATTTCAACAGCTTCTGAAATGAT 605510 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTA-TAGAAGATGTTTAAACATCAAACATGCAA 18967 |||| | | | || || || | ||| || |||| |||||| |||| Sbjct 605511 TCTYTCAACAATCTTTGGATCTGGCTTGTTCTTCAAG-TGRGAGAACAACAAACAGGCAA 605569 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | ||| |||| || |||||||| | ||||| || || || || || |||||||||| Sbjct 605570 AGTCAGTGTGTAAACCTTCGTCTCTGCAGATCAACTCGTTGGAGAAGGTCAAACCAGGCA 605629 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 ||| ||| | || || |||||||| |||| |||||||||||| || ||||| | ||| | Sbjct 605630 TCAAACCTTTCTTCTTYAACCAGAAGATAGCAGCAAATGATCCGGAGAAGAAGACACCCT 605689 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147 | || || || |||||||| |||||||| || | || || || | || |||||| Sbjct 605690 CAACAGCAGCGAAAGCAACCAGTCTTTCAGCAAACAGGGCGTCCTTGTCTTGGATCCATC 605749 Query 19148 TCAGTGCCCAATCAGCCTT---CTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 | | ||||| || ||||| ||| || || || || || ||||| | ||| |||| Sbjct 605750 TGATGGCCCATTCGGCCTTTTCCTTGATTTCA---GGAATGGTTTCTATGGCATTGAATA 605806 Query 19205 GATACATACG--CTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTC 19262 | | || || || | | || || | |||| || | |||||| ||| |||| Sbjct 605807 -AGA-ATTCGTTTTCCTTAGKGTCCTTGATGTATGTGTCCAACAATAAGGAGTAGGTTTC 605864 Query 19263 TGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTG 19322 ||| || || ||||| || || || || || || ||||| | ||||||| || || Sbjct 605865 TGAGTGGATGTTTTCCATCATGATTTGGAAACCRTAGAAACACTTGGCTTCTGGAATTTG 605924 Query 19323 TACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAA 19382 || ||| | | || |||| ||||| || || || || || |||||| || ||||| Sbjct 605925 RACYTCAGCAGAGAAATTTTCAACCAAGTTCTCRTTGACAATACCATCAGAGGCAGCAAA 605984 Query 19383 AAATGCTAATACATGTTTAATAA--AATGT----TTTTCATCTGAGGTTAATGTATTCCA 19436 || || || || ||||| ||| | ||||||| | | || | ||||| Sbjct 605985 GAAGGCCAAMACTCTRGAAATAAAGAATCTTTCGTTTTCAT-TCA--TTCTGTTGTTCCA 606041 Query 19437 ATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTT 19496 |||| | ||| || || ||||| | ||||||| ||||||| |||||||| || ||| | Sbjct 606042 GTCATGTAAATCCTTGGACAAATCAATTTCTTCAGCTGTCCAGAAAGAAGCTTCGGCTCT 606101 Query 19497 TTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATT 19556 ||||| | ||| || ||| | | | || || || | |||||||| | || || Sbjct 606102 CTTATARGCTTCCCAAATTTCAGGGAACTTGATTGGGAACAAGACAAATCTTCTCTTGTT 606161 Query 19557 TTC 19559 ||| Sbjct 606162 TTC 606164 >seq11 Length=1501259 Score = 242 bits (268), Expect = 4e-59 Identities = 563/849 (66%), Gaps = 4/849 (0%) Strand=Plus/Minus Query 47956 ATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCA 48015 | ||||| |||||||| || | || || |||||||| | |||||||||| | Sbjct 717733 AYTTGATGGTACCCAAGTTCTTTTGGTTGGACTTCTTGTTACAGGAATCCTTGTAAACAA 717674 Query 48016 TAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCT 48075 | || || || |||||||| | || | ||| | ||| | | ||| | | |||| Sbjct 717673 TGAATGGAGTACCAGTTTCAGTTTGRGCTTCTAAGATGGCGTACCACAACTTTTGGGCCT 717614 Query 48076 TTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCAT 48135 | || ||| || | || || |||| | ||| | ||| || ||||||| Sbjct 717613 TGATGGTCTTTCTWCCTCTWCCTTCCAACTCATATTGATCATAAAGCTTTTCGAATTCAT 717554 Query 48136 CCCCATACACATTATCTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCAT 48195 | ||||| ||| | || || ||| |||| ||||| | | ||| | |||||| ||| Sbjct 717553 CACCATAAGCATCACTCAAACCTGGAGCTTCACTAGGAGAGAACAAGGTCCAATCAGCAT 717494 Query 48196 CATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAG 48255 || ||||| |||| || | |||||| |||||||| ||| ||||| || || | Sbjct 717493 TGGCCTTGACTCTCTTCATGAACAAATCTGGAATCCAAAGRGCTGGGAATAARTCTCTGG 717434 Query 48256 TTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCAT 48315 ||| | |||||| || || ||| || | | |||| || || | ||||| | | Sbjct 717433 CTCTGATTTCTTCTTTACCGTGGTTCTTTCTGATGTCAATGAAATCAAAGATATCTGAGT 717374 Query 48316 GCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATAT 48375 |||||||||| || || | || | ||||||||| || ||||| |||||||| | || Sbjct 717373 GCCATGGTTCCAAGTACAAGGCAAAGGCACCTGGTCTCTTGTTACCACCTTGATCAACAT 717314 Query 48376 ATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGG 48435 ||||||| || ||||| | ||||| | ||| || | | |||||| || |||| |||| Sbjct 717313 ATCTGGCGGTGTTGTTGAAGACTCTGACCATAGGAATCAAACCATTGGAAGTACCGTTGG 717254 Query 48436 TTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT-TGAAATACCTATACCACCT 48494 | || | ||| ||| ||| | | ||| || || || || || ||| |||||||| Sbjct 717253 TACCTGCAATGTAAGAACCAGTGGATCTGATGTTGTGGATGTGCAA-ACCAATACCACCA 717195 Query 48495 GCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCA 48554 || | || || ||| ||||||| || | ||| || || || || || || || Sbjct 717194 GCAGTCTTGGAGATTTGAGCACATTCCTTCAAGGTGTCGTAGATACCGTCAATGGAGTCG 717135 Query 48555 TCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAAT 48614 || |||| || | |||||| |||||||| || ||| || | ||| || Sbjct 717134 TCCTTCATTGATACCAAGAAACAAGAGGACATTTGAGGTCTTGGAGTACCGGCATTGAAC 717075 Query 48615 AATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACA 48674 || |||||||| || || | || || | | || | ||| || || |||||||| || Sbjct 717074 AAAGTTGGAGAGGCGTGGGTGAAGTATCTTTGAGACATCAAGTTGTAAGTTTCAATGACT 717015 Query 48675 GAATCTAT-ATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCT 48733 || || | || | || ||||| | || || | ||| | || | ||| ||||| Sbjct 717014 TTGTCGATGTTTTCACCG-TGAATACCAACAGCAACTCTCATGATCAAGTGTTGCGGTCT 716956 Query 48734 TTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAA 48793 |||||| || || || || ||||| ||||| ||| ||||||| || || |||||||| Sbjct 716955 TTCAACGATCTTACCGTTGATCTTCAATAGATAAGATCTTTCCAAGGTCTTGAAACCAAA 716896 Query 48794 ATAGTTGTA 48802 |||||||| Sbjct 716895 GTAGTTGTA 716887 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108680551880