Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20opuntiae_20[genbank_20GCA_5F001749795.1_202016-09- 27] 17 sequences; 8,831,957 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2 159 5e-34 seq16 136 6e-27 seq14 132 7e-26 seq1 93.3 6e-14 >seq2 Length=1277918 Score = 159 bits (176), Expect = 5e-34 Identities = 543/840 (65%), Gaps = 20/840 (2%) Strand=Plus/Plus Query 17861 GCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATT 17920 || |||| ||| || ||| | || || ||||| || ||||| || | || ||||| Sbjct 605269 GCCTTTTGGTAATCAGATACTCTCTTTTCAAAGAAGTTGGTCTTACCAGCTAAGGATATG 605328 Query 17921 AAATTCATAAAATCAAATGGATTAGTGGTTTTATAATAT-TTTTCTTGTATTAATTCGTA 17979 | ||| || ||||||||||| || || || || ||||| || || Sbjct 605329 TTTTCCATGAAGTCAAATGGATTGGTAACATTG-AAGATCTTTTCGCAACCCAAGGCGAC 605387 Query 17980 TAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAG 18039 ||| |||||||| || || ||||| || ||||| |||||| || ||||||||| | Sbjct 605388 TAACAATCTATCAGCAACGAATTCAACGTATTGGTTCATCAAGTCAGCATTCATACCCAA 605447 Query 18040 TAGTCTGAAAGGTAGAGCATCAATAATAAAT-TCTTTCTCTATCTCAACAGACTCTT--- 18095 | | || | |||||||| | || ||||| || || ||||||| ||| Sbjct 605448 CAAGGCAACTGGAATGGCATCAATGAAGTATCTCTTT-TCRATTTCAACAGCTTCTGAAA 605506 Query 18096 TTATTATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATA 18155 | ||| | | | | | | | | |||| || || | | ||| | | || | Sbjct 605507 TGATTCTYTCAACAATCTTTGGATCTGGC---TTGTTCTTCAAGTGRG---AGAACAACA 605560 Query 18156 AACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTA 18215 |||| ||||| ||||||||||||||||| |||||| | || || ||||| || || | Sbjct 605561 AACAGGCAAAGTCAGTGTGTAAACCTTCGTCTCTGCAGATCAACTCGTTGGAGAAGGTCA 605620 Query 18216 ACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGA 18275 | || ||||| | |||| | || || | ||| || || | || || | || |||| Sbjct 605621 AACCAGGCATCAAACCTTTCTTCTTYAACCAGAAGATAGCAGCAAATGATCCGGAGAAGA 605680 Query 18276 ATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTC 18334 | | ||||||||| ||| ||||| || | | |||||||||||| | | ||| Sbjct 605681 AGACACCCTCAACAGCA-GCGAAAGCAACCAGTCTTTCAGCAAACAGGGCGTCCTTGTCT 605739 Query 18335 AGTATCCATTTTTGTGCCCATTC-TCCTTNNNNNNNNATACACGGTATACTCTCTATAGC 18393 | |||||| | |||||||| |||| | || || || | ||||| || Sbjct 605740 TGGATCCATCTGATGGCCCATTCGGCCTTTTCCTTGATTTCA-GGAATGGTTTCTATGGC 605798 Query 18394 ATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATA 18453 ||| || || || ||||| || | || || || || ||||| | || || || || Sbjct 605799 ATTGAATAAGAATTCGTTTTCCTTAGKGTCCTTGATGTATGTGTCCAACAATAAGGAGTA 605858 Query 18454 CATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513 |||| || || ||| ||||||| || || |||| || || | | || || || Sbjct 605859 GGTTTCTGAGTGGATGTTTTCCATCATGATTTGGAAACCRTAGAAACACTTGGCTTCTGG 605918 Query 18514 ATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGA 18573 | ||| | || | | || |||| ||||| ||||| || || ||||| |||| | Sbjct 605919 AATTTGRACYTCAGCAGAGAAATTTTCAACCAAGTTCTCRTTGACAATACCATCAGAGGC 605978 Query 18574 TGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGA---GATTGTT 18630 || || || ||||| || ||| || | |||| || || || | ||||| Sbjct 605979 AGCAAAGAAGGCCAAMACTCTRGAAATAAAGAATCTTTCGTTTTCATTCATTCTGTTGTT 606038 Query 18631 CCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGC 18690 ||| |||| || ||| || || | ||||| |||||| | |||||| ||||| | |||||| Sbjct 606039 CCAGTCATGTAAATCCTTGGACAAATCAATTTCTTCAGCTGTCCAGAAAGAAGCTTCGGC 606098 >seq16 Length=958289 Score = 136 bits (150), Expect = 6e-27 Identities = 173/236 (73%), Gaps = 4/236 (2%) Strand=Plus/Plus Query 155817 AATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAA 155876 |||| ||||||||| ||| |||||||||| || || || || || || |||||||| ||| Sbjct 204162 AATATAATGCAAATTTTTGTTAAAACATTAACCGGTAAGACCATCACCTTAGAAGTTGAA 204221 Query 155877 GATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCA 155936 | ||| ||| || || |||||| |||||||| ||||| || || || Sbjct 204222 TCTAGTGACTCCATTGATGCTGTTAAGTCTAAAATCCAAGATAAGGAAGGTATTCCACCT 204281 Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGAT 155996 || |||||||||||||| | ||| |||||||| | ||||| ||||| ||||| || Sbjct 204282 GATCAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTATCTGAC 204341 Query 155997 TATAATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || | | ||||||| || | || || |||||||| || ||||||||||| ||| Sbjct 204342 TACA--ACATCCAAAAGGAATCAACACTCCATTTAGTTTTGAGATTAAGAGGTGGT 204395 >seq14 Length=450723 Score = 132 bits (146), Expect = 7e-26 Identities = 171/234 (73%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| || | ||||| | ||||| || || ||||| || || |||||| | Sbjct 422319 AAAATGCAAATTTTCGTAAAAACTCTAACTGGTAAGACCATTACTTTGGAGGTCGAATCT 422260 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 |||||| || | || || |||||| ||||| |||||||| || || || || Sbjct 422259 TCTGATTCCATCGACATTGTTAAGGCTAAAATCCAAGACAAAGAAGGTATCCCACCTGAG 422200 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 ||||||||||| || | || |||||||| | ||||| ||||||||||| || || Sbjct 422199 CAACAAAGATTAATCTTCGCTGGTAAGCAATTAGAAGACGGTAGAACTTTATCTGACTAC 422140 Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 || || ||||| || | || || |||||||| || ||||||||||| |||| Sbjct 422139 AACAT--CCAAAAGGAATCCACCCTGCATTTAGTCTTGAGATTAAGAGGTGGTG 422088 >seq1 Length=232064 Score = 93.3 bits (102), Expect = 6e-14 Identities = 110/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 155907 AAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAG 155966 || || ||||| || ||||| || || || || ||||||||||| || | | |||||| Sbjct 90642 AAGATCCAAGACAAGGAAGGTATTCCACCTGATCAACAAAGATTAATCTTCTCTGGTAAG 90701 Query 155967 CAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA--GAGGCGACGCTTC 156024 || | |||||| ||||||||| || || || | | ||||||| || | || | | Sbjct 90702 CAATTAGAAGATGGCAGAACTTTGTCTGAYTACA--ACATCCAAAAGGAATCAACATTGC 90759 Query 156025 ATTTAGTGTTAAGATTAAGAGGCGGTGT 156052 ||||||| ||||||||||||| ||||| Sbjct 90760 ATTTAGTCCTAAGATTAAGAGGTGGTGT 90787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871844477200