Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20opuntiae_20[genbank_20GCA_5F001749795.1_202016-09- 27] 17 sequences; 8,831,957 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq11 132 1e-25 seq2 114 3e-20 >seq11 Length=1501259 Score = 132 bits (146), Expect = 1e-25 Identities = 389/596 (65%), Gaps = 17/596 (3%) Strand=Plus/Plus Query 110302 ACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCA 110361 |||| ||||||||||| || | ||| | ||||| || | |||| || ||||| Sbjct 716891 ACTACTTTGGTTTCAAGACCTTGGAAAGATCTTATCTATTGAAGATCAACGGTAAGATCG 716950 Query 110362 TTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTA 110421 ||||| | || |||||| || | | | ||||| |||||||||| || | | || Sbjct 716951 TTGAAAGACCGCAACACTTGATCATGAGAGTTGCTGTTGGTATTCACGGTGAAAACATCG 717010 Query 110422 AAGCTGTTATTGAATGTTA-----TGATGTATTAAGTAAAAAGAAAGCT-ATTCATGCTA 110475 | || |||||| ||| |||||| | || ||| | | | || || Sbjct 717011 ACAAAGTCATTGAAACTTACAACTTGATGTCTCAA------AGATACTTCACCCACGCCT 717064 Query 110476 CTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTC-TA 110534 |||| || | || || || || ||| || ||| || | ||||| |||||| || Sbjct 717065 CTCCAACTTTGTTCAATGCCGGTACTCCAAGACCTCAAATGTCCTCTTG-TTTCTTGGTA 717123 Query 110535 GGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATT 110594 ||| || || || || ||||| ||||| || || | | || ||| ||||| || Sbjct 717124 TCAATGAAGGACGACTCCATTGACGGTATCTACGACACCTTGAAGGAATGTGCTCAAATC 717183 Query 110595 TCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAAT 110654 || || | |||| || |||||| | ||| | || | || | || | || | | Sbjct 717184 TCCAAGACTGCTGGTGGTATTGGTTTGCACATCCACAACATCAGATCCACTGGTTCTTAC 717243 Query 110655 ATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGAC 110714 || ||| | || ||| |||| | ||| | |||| ||| | |||||||||||| || Sbjct 717244 ATTGCAGGTACCAACGGTACTTCCAATGGTTTGATTCCTATGGTCAGAGTCTTCAACAAC 717303 Query 110715 ACTGCAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTC 110771 || || | |||||| ||||||||||| |||||| || | ||||| | || | Sbjct 717304 ACCGCCAGATATGTTGATCAAGGTGGTAACAAGAGACCAGGTGCCTTTGCCTTGTACTTG 717363 Query 110772 GAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAA 110831 ||||| ||||| |||||||| ||||| ||| | || | | || || || || ||| Sbjct 717364 GAACCATGGCACTCAGATATCTTTGATTTCATTGACATCAGAAAGAACCACGGTAAAGAA 717423 Query 110832 GAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAA 110887 ||| ||||| | || ||||| || | |||||| ||||||| |||||||| Sbjct 717424 GAAATCAGAGCCAGAGAYTTATTCCCAGCYCTTTGGATTCCAGATTTGTTCATGAA 717479 Score = 114 bits (126), Expect = 3e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 ||||| ||||| || ||||| ||| ||||||||||||| |||||||| |||| ||||||| Sbjct 515442 GTTCTTTTCAACAGACAACCTTCATTGCATAAAATGTCCATGATGGCGCATAGAGTCAAA 515383 Query 305390 GTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGAT 305449 || | || | ||||| ||||||| || || | | | || |||||||| ||| Sbjct 515382 GTCATGCCTTATTCTACATTCAGATTAAACTTATCTGTTACTTCTCCATATAATGCTGAT 515323 Query 305450 TTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 || ||||| |||||||||||| | || || || ||| Sbjct 515322 TTCGATGGTGATGAAATGAATTTACACGTTCCACAA 515287 >seq2 Length=1277918 Score = 114 bits (126), Expect = 3e-20 Identities = 266/396 (67%), Gaps = 14/396 (4%) Strand=Plus/Minus Query 131787 TTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGATTCCGCTA 131846 |||||| ||| || | || || |||||||| || | |||||| ||||| | ||| Sbjct 605785 TTCCTGAAATCAAGGAAAAGGCCGAATGGGCCATCAGATGGATCCAAGACAAGGACGCCC 605726 Query 131847 ATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCAGGTGCTT 131906 ||| || |||||| || ||||| ||| |||||| ||| | ||||| || || | | Sbjct 605725 TGTTTGCTGAAAGACTGGTTGCTTTCGCTGCTGTTGAGGGTGTCTTCTTCTCCGGATCAT 605666 Query 131907 TCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTGTCCAATC 131966 | ||||||||| ||| | |||||| || ||||||||||| | | || ||||| Sbjct 605665 TTGCTGCTATCTTCTGGTTRAAGAAGAAAGGTTTGATGCCTGGTTTGACCTTCTCCAACG 605606 Query 131967 AATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGC---TATATTAATCTATAGAA 132023 | || |||| ||||| |||| || || ||||| ||||| | | || ||| Sbjct 605605 AGTTGATCTGCAGAGACGAAGGTTTACACACTGACTTTGCCTGTTTGTTGTTCTCY---- 605550 Query 132024 AATTTGCTG-ATAAACTTGATGAAAATAATATTAAACAACTTATAAGCGAAGCAGTTGAT 132082 | ||| | | || | ||| ||| | | || | | | || ||||| ||||| Sbjct 605549 CACTTGAAGAACAAGCCAGATCCAAAGATTGTTGARAGAATCATTTCAGAAGCTGTTGAA 605490 Query 132083 ATCGAGAAGGAGTTTATT-ACAGAAGCTTTGCC--TTGCAATTTGATTGGGATGAATGCT 132139 || || || ||| | || | || || | || |||| ||| | || ||||||||| Sbjct 605489 ATYGA-AAAGAGATACTTCATTGATGCCATTCCAGTTGC--CTTGTTGGGTATGAATGCT 605433 Query 132140 GACTCTATGAAGGAGTACATTGAATTCGTTGCTGAT 132175 |||| ||||| | ||| ||||||||||||||||| Sbjct 605432 GACTTGATGAACCAATACGTTGAATTCGTTGCTGAT 605397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812541497337