Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20opuntiae_20[genbank_20GCA_5F001749795.1_202016-09- 27] 17 sequences; 8,831,957 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq14 129 7e-25 seq16 127 2e-24 seq1 89.7 6e-13 seq11 82.4 9e-11 >seq14 Length=450723 Score = 129 bits (142), Expect = 7e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || || || || || || || ||||| |||||| | ||||| || || Sbjct 422317 AATGCAAATTTTCGTAAAAACTCTAACTGGTAAGACCATTACTTTGGAGGTCGAATCTTC 422258 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | | | | ||||||||||| || ||||| || || || || || || || Sbjct 422257 TGATTCCATCGACATTGTTAAGGCTAAAATCCAAGACAAAGAAGGTATCCCACCTGAGCA 422198 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || | |||| || |||||||||||| | || || | | | || || | ||||| || Sbjct 422197 ACAAAGATTAATCTTCGCTGGTAAGCAATTAGAAGACGGTAGAACTTTATCTGACTACAA 422138 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 |||||||||||||||| || ||| |||||||| Sbjct 422137 CATCCAAAAGGAATCCACCCTGCATTTAGTCTTG 422104 >seq16 Length=958289 Score = 127 bits (140), Expect = 2e-24 Identities = 165/227 (73%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 27393 AAATATTAC-TATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTG 27451 |||||| | |||||||||||| ||||| || || | ||||| ||||| || || | | Sbjct 204154 AAATATCAAATATAATGCAAATTTTTGTTAAAACATTAACCGGTAAGACCATCACCTTAG 204213 Query 27452 AGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAA 27511 | ||||| || |||| ||||| | | ||| ||||||| || || ||||| || | Sbjct 204214 AAGTTGAATCTAGTGACTCCATTGATGCTGTTAAGTCTAAAATCCAAGATAAGGAAGGTA 204273 Query 27512 TTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCC 27571 |||| || || || || | | || ||||||||||||||| | || || | | | ||| Sbjct 204274 TTCCACCTGATCAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCT 204333 Query 27572 TAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 || | ||||| || ||||||||||||| || || ||| |||| ||| Sbjct 204334 TATCTGACTACAACATCCAAAAGGAATCAACACTCCATTTAGTTTTG 204380 >seq1 Length=232064 Score = 89.7 bits (98), Expect = 6e-13 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 ||||||||||| | ||||| ||||| |||||| | || || || || || | ||| Sbjct 90567 TTTGTCAAGACCTTAACCGGTAAGACCATTACTTTGGAAGTCGAATCTACCGAAACCATC 90626 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | | | ||||| || || || |||||||| || ||||| || || || || | || Sbjct 90627 GACGCTGTCAAGGCCAAGATCCAAGACAAGGAAGGTATTCCACCTGATCAACAAAGATTA 90686 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || ||||||||||| | || |||| | || | | || || || |||||||| Sbjct 90687 ATCTTCTCTGGTAAGCAATTAGAAGATGGCAGAACTTTGTCTGAYTACAACATCCAAAAG 90746 Query 27595 GAATCCACTCTTCATCTAGTC 27615 ||||| || | ||| ||||| Sbjct 90747 GAATCAACATTGCATTTAGTC 90767 >seq11 Length=1501259 Score = 82.4 bits (90), Expect = 9e-11 Identities = 241/366 (66%), Gaps = 4/366 (1%) Strand=Plus/Minus Query 81379 CCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATACCA 81438 ||||| || | || || | ||| || ||| || || | | |||||| || | |||| Sbjct 717329 CCACCTTGATCAACATATCTGGCGGTGTTGTTGAAGACTCTGACCATAGGAATCAAACCA 717270 Query 81439 TCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCACCTTGCTGAT-TGA 81497 | || |||||| ||||| | || || || ||| | | ||| ||| || Sbjct 717269 TTGGAAGTACCGTTGGTACCTGCAATGTAAGAACCAGTGGATCTGATGTTGTGGATGTGC 717210 Query 81498 AAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATAAAT 81557 || ||| || ||||| | ||| || || |||||||| |||| ||| || || || Sbjct 717209 AA-ACCAATACCACCAGCAGTCTTGGAGATTTGAGCACATTCCTTCAAGGTGTCGTAGAT 717151 Query 81558 TCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCTTTT 81617 || || ||| || | ||||| | ||||||||| ||||| ||||| ||| Sbjct 717150 ACCGTCAATGGAGTCGTCCTTCATTGATACCAAGAAACAAGAGGACATTTGAGGTCTTGG 717091 Query 81618 TGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAGGTC 81677 | ||||||||||||| ||||| | ||||| |||| || | | ||||||| || Sbjct 717090 AGTACCGGCATTGAACAAAGTTGGAGAGGCGTGGGTGAAGTATCTTTGAGACATCAAGTT 717031 Query 81678 ATAGGTTTCCTTGAC-GCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCATAA 81736 || ||||| |||| || | || | |||||||||||||| | ||| || | ||| | Sbjct 717030 GTAAGTTTCAATGACTTTGTCG-ATGTTTTCACCGTGAATACCAACAGCAACTCTCATGA 716972 Query 81737 ACATGT 81742 || || Sbjct 716971 TCAAGT 716966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310278809040