Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20opuntiae_20[genbank_20GCA_5F001749795.1_202016-09- 27] 17 sequences; 8,831,957 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq14 161 2e-34 seq1 158 3e-33 seq16 147 5e-30 seq11 93.3 1e-13 >seq14 Length=450723 Score = 161 bits (178), Expect = 2e-34 Identities = 167/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| ||| | || || |||||||| ||||||| ||||| || | |||||||| || Sbjct 422101 TCTCAAGACTAAATGCAGGGTGGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACC 422160 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||||| ||||| ||||||||||| | || |||||| || || || |||||||| || Sbjct 422161 GTCTTCTAATTGCTTACCAGCGAAGATTAATCTTTGTTGCTCAGGTGGGATACCTTCTTT 422220 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||||||| || ||| ||| ||||||| || || | ||| || || || || || Sbjct 422221 GTCTTGGATTTTAGCCTTAACAATGTCGATGGAATCAGAAGATTCGACCTCCAAAGTAAT 422280 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || || | |||||||| ||| | ||||||||| Sbjct 422281 GGTCTTACCAGTTAGAGTTTTTACGAAAATTTGCATTTT 422319 >seq1 Length=232064 Score = 158 bits (174), Expect = 3e-33 Identities = 155/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| ||||| | || | || ||||| ||||||| ||||| || | ||||||||| || Sbjct 90773 TCTTAGGACTAAATGCAATGTTGATTCCTTTTGGATGTTGTARTCAGACAAAGTTCTGCC 90714 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||||| ||||| |||| |||||| | || |||||| || || |||||||||||||| Sbjct 90713 ATCTTCTAATTGCTTACCAGAGAAGATTAATCTTTGTTGATCAGGTGGAATACCTTCCTT 90654 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| ||| ||||| |||||||| || | | ||| || || || || || Sbjct 90653 GTCTTGGATCTTGGCCTTGACAGCGTCGATGGTTTCGGTAGATTCGACTTCCAAAGTAAT 90594 Query 225678 CGTCTTGCCCGTCAAAGTTTT 225698 ||||| || || || || || Sbjct 90593 GGTCTTACCGGTTAAGGTCTT 90573 >seq16 Length=958289 Score = 147 bits (162), Expect = 5e-30 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | ||||| || ||||| ||||||| ||||| || | || ||||| || Sbjct 204383 TCTCAAAACTAAATGGAGTGTTGATTCCTTTTGGATGTTGTAGTCAGATAAGGTTCTACC 204324 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||| | ||||| ||||| ||||| | || |||||| || || |||||||||||||| Sbjct 204323 GTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGATCAGGTGGAATACCTTCCTT 204264 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||| || ||| ||||| || |||| ||| | ||| || ||||| ||||| Sbjct 204263 ATCTTGGATTTTAGACTTAACAGCATCAATGGAGTCACTAGATTCAACTTCTAAGGTGAT 204204 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTAT 225718 ||||| || || || ||||| | || | ||||||| ||| Sbjct 204203 GGTCTTACCGGTTAATGTTTTAACAAAAATTTGCATTATAT 204163 >seq11 Length=1501259 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| |||||||||||||| || || || ||||| || || |||||||| ||||||||||| Sbjct 1311940 GAAGATTTGACCATCAGTGATGGAAATGACATTGGTTGGAATATAAGCGGAAACATCACC 1311881 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATT 4580 |||| ||||| | || ||||| || || | || |||||||| || || Sbjct 1311880 ACCTTGGGTTTCAATGACTGGTAAAGCAGTCATRGAACCACCACCTAACTT 1311830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530940251798