Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20opuntiae_20[genbank_20GCA_5F001749795.1_202016-09- 27] 17 sequences; 8,831,957 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2 233 2e-56 >seq2 Length=1277918 Score = 233 bits (258), Expect = 2e-56 Identities = 600/907 (66%), Gaps = 13/907 (1%) Strand=Plus/Plus Query 4236 GACTTTGAACAAACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTT 4295 ||||| | | |||||| |||||||| || ||||||| |||||| ||||| || || Sbjct 605251 GACTTGGCAATAACACCTGCCTTTTGGTAATCAGATACTCTCTTTTCAAAGAAGTTGGTC 605310 Query 4296 TTGCCTTCTAACGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTT 4355 || || |||| || || |||||||| || ||||| ||||| || | ||| | ||| Sbjct 605311 TTACCAGCTAAGGATATGTTTTCCATGAAGTCAAATGGATTGGTAACATTGAAGATCTTT 605370 Query 4356 TCACACTTTAGAGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGT 4415 || || | || || | ||||| ||||| || ||||| | || ||| |||| | Sbjct 605371 TCGCAACCCAAGGCGACTAACAATCTATCAGCAACGAATTCAACGTATTGGTTCATCAAG 605430 Query 4416 TC-GCAGTTAATTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAA-CTCTTGTTCTA 4473 || ||| || || || | || || || | || | | || | ||||| ||| | Sbjct 605431 TCAGCA-TTCATACCCAACAAGGCAACTGGAATGGCATCAATGAAGTATCTCTT-TTCRA 605488 Query 4474 TAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTTAGAT--GGTTTATTTACTAA 4531 | || ||||||| || || ||| | | |||||| ||| || || || || Sbjct 605489 TTTCAACAGCTTCTGAAATGAT-TCTYTCAACA-ATCTTTGGATCTGGCTTGTTCTTCAA 605546 Query 4532 GTATCCAAACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTC 4591 || ||||| ||||| ||||| ||| || |||||||||||||||| |||| || Sbjct 605547 GTGRGAGAACAACAAACAGGCAAAGTCAGTGTGTAAACCTTCGTCTCTGCAGATCAACTC 605606 Query 4592 GTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAA 4651 ||| || || || || || ||||| |||||| |||| || | ||| || ||||| ||||| Sbjct 605607 GTTGGAGAAGGTCAAACCAGGCATCAAACCTTTCTTCTTYAACCAGAAGATAGCAGCAAA 605666 Query 4652 TGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGA 4711 ||| || || ||||| | || || || || || || || || | || | ||| Sbjct 605667 TGATCCGGAGAAGAAGACACCCTCAACAGCAGCGAAAGCAACCAGTCTTTCAGCAAACAG 605726 Query 4712 GCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAAT 4771 | | | ||||||| |||||| | | ||||| | || |||| ||| | ||||| Sbjct 605727 GGCGTCCTTGTCTTGGATCCATCTGATGGCCCATTCGGCCTTTTCCTTGATTTCAGGAAT 605786 Query 4772 TGTGTATATAGCGTTAAATAA-TTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTA 4830 || | ||| || || ||||| | | |||| | | | ||| | || || ||||| | Sbjct 605787 GGTTTCTATGGCATTGAATAAGAATTCGTTTTCCTTA-GKGTCCTTGATGTATGTGTCCA 605845 Query 4831 TTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGC 4890 | || | || |||| || || || ||||| || || || || || || || | Sbjct 605846 ACAATAAGGAGTAGGTTTCTGAGTGGATGTTTTCCATCATGATTTGGAAACCRTAGAAAC 605905 Query 4891 ATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTA 4950 | | ||||||| | ||| || || | | || |||| || ||||| || || || | Sbjct 605906 ACTTGGCTTCTGGAATTTGRACYTCAGCAGAGAAATTTTCAACCAAGTTCTCRTTGACAA 605965 Query 4951 TACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCG---TCAG 5007 |||| ||| ||| ||||| || ||||| || || |||||| | |||| ||| Sbjct 605966 TACCATCAGAGGCAGCAAAGAAGGCCAAMACTCTRGAAATAAAGAATCTTTCGTTTTCAT 606025 Query 5008 GCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAA 5067 | | || ||||||| | ||||| || | ||||||| ||||||| | ||||| | Sbjct 606026 TCATTCTGTTGTTCCAGTCATGTAAATCCTTGGACAAATCAATTTCTTCAGCTGTCCAGA 606085 Query 5068 ACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGA 5127 | || ||||| ||| | || || |||||| ||||| ||| || || | | || Sbjct 606086 AAGAAGCTTCGGCTCTCTTATARGCTTCCCAAATTTCAGGGAACTTGATTGGGAACAAGA 606145 Query 5128 CAAATCT 5134 ||||||| Sbjct 606146 CAAATCT 606152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049511520661