Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20osmophila_20[genbank_20GCA_5F001747045.1_202016-09- 27] 17 sequences; 11,458,415 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq17 100 2e-16 seq15 95.1 1e-14 >seq17 Length=834807 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| || || |||| || | || || || |||||||| ||||| || | | Sbjct 25747 CCACCTCTCAATCTCAAAACCAAATGAAGRGTGGATTCTTTTTGAATGTTGTAGTCAGAC 25688 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | || |||| |||||||| ||| | || | ||| || || || || Sbjct 25687 AAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 25628 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || |||||||| ||||| ||| || | | | | ||| || || || | Sbjct 25627 ATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTGTCAATAGTGTCAGAAGATTCAACT 25568 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || | |||||||||||||||||| |||||||| || ||||||||||| || Sbjct 25567 TCCAAGGTAATGGTTTTACCTGTCAAAGTTTTAACGAAAATTTGCATCTT 25518 >seq15 Length=1932387 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| || || || | || | ||| ||||||||||| || ||||| |||| | Sbjct 1576873 CCACCTCTCAATCTCAAGACTAAATGAAGCGTGGACTCCTTTTGGATGTTGTAGTCCGAC 1576814 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| || |||| |||| ||||||||| ||| | || | ||| || || || || Sbjct 1576813 AAAGTTCTGCCGTCTTCCAACTGTTTACCAGCAAAGATCAATCTTTGTTGGTCTGGTGGA 1576754 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||||||||| || || || || | | ||| || || || || | Sbjct 1576753 ATCCCCTCTTTGTCTTGGATCTTGGACTTGACGTTGTCGATCGTGTCTGAAGATTCGACT 1576694 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATTTT 19044 || | || ||||| || || || || ||||| || |||||||||||||| Sbjct 1576693 TCCAAAGTGATGGTCTTCCCAGTCAATGTTTTAACGAAAATTTGCATTTT 1576644 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| || || || | || | ||| ||||||||||| || ||||| |||| | Sbjct 1577101 CCACCTCTCAATCTCAAAACTAAATGAAGCGTGGACTCCTTTTGGATGTTGTAGTCCGAC 1577042 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| || |||| |||| ||||||||| ||| | || | ||| || || || || Sbjct 1577041 AAAGTTCTGCCGTCTTCCAACTGTTTACCAGCAAAGATCAATCTTTGTTGGTCTGGTGGA 1576982 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGG-CTCCGT 18993 | || |||||||| || || || || | | ||| || || | ||| ||| Sbjct 1576981 ATCCCTTCTTTGTCTTGGATCTTGGACTTGACGTTGTCGATCGTGTC-CGAGGACTCGAC 1576923 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | || |||||||| || || || ||||| || ||||||||||| Sbjct 1576922 TTCCAAAGTGATGGTTTTCCCAGTCAATGTTTTAACGAAAATTTGCAT 1576875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414572714105698