Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20osmophila_20[genbank_20GCA_5F001747045.1_202016-09- 27] 17 sequences; 11,458,415 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq14 237 4e-57 seq2 154 3e-32 >seq14 Length=1659880 Score = 237 bits (262), Expect = 4e-57 Identities = 619/920 (67%), Gaps = 47/920 (5%) Strand=Plus/Minus Query 268700 AGATTTGTGATATTTCCAATACAGCATGGTGATATATGG-AGGATGTACAAACAGGCCGT 268758 |||||||| | |||||||| | || ||| || ||| | | | || |||| || | Sbjct 313330 AGATTTGTTTTGTTTCCAATCAAATATCATGAAATTTGGCAAGCT-TATAAACGTGCAGA 313272 Query 268759 TGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAA 268818 |||||||||||||||| ||||||| | ||||| || | || || |||||||| || Sbjct 313271 AGCTTCTTTTTGGACTGCAGAAGAAATTGATCTATCCAAAGATTTGCACGATTGGAATAA 313212 Query 268819 TTTAA--AACCAGAA-GAAAGAAGATTTATATCTTATATTCTT-GCGTTTTTTGCAGTTA 268874 || || | || |||||| || || | || | | || || |||||||||| | Sbjct 313211 CAGAATGAATGAAAATGAAAGATTTTTCAT-TAGTAGAGTTTTAGCATTTTTTGCAGCTT 313153 Query 268875 GTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTG 268934 |||||| || ||||| |||||| | || || || || || ||| || || ||||||| Sbjct 313152 CTGATGGAATTGTTAATGAAAATTTGGTTGAAAATTTTAGTGCAGAAGTGCAAATTCCTG 313093 Query 268935 AAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGA----TG 268990 |||||| ||||||||||||||| || || || ||||| ||||| ||| || | Sbjct 313092 AAGCCAAATGTTTTTACGGATTTCAAATTATGATGGAAAACATTCA--CAGTGAAACTTA 313035 Query 268991 TACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCT 269050 | || || || || ||||||||||| | ||| | |||||||| | |||| | Sbjct 313034 TTCA--CTTTTGATTGATACTTATATCAAAGAT-----CCAAAAGAAAGCGATTTTTTAT 312982 Query 269051 TCTATGAGA-----ACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGA 269105 || ||| | || || | | | |||| | ||||||||| | | ||||| Sbjct 312981 TCAATGCCATTGAAACAATTCCTCAAATCAAAGAAAAGGCAGAATGGGCTATTAGATGGA 312922 Query 269106 T---AAACGATAGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTA 269162 | | |||| || | || | ||||| || || || ||||| ||||| |||||| Sbjct 312921 TTCAAGACGAAGATGCACTTTTTGCTGAAAGATTGGTGGCATTTGCTGCTGTGGAAGGTG 312862 Query 269163 TATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAG 269222 | |||||||| || || ||||| || ||||||||||||||||||| || | ||||||| Sbjct 312861 TTTTCTTTTCTGGATCCTTTGCTGCAATCTTTTGGTTGAAGAAAAAGGGGTTGATGCCAG 312802 Query 269223 GATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTT 269282 | |||||||| || || |||||||| | || || ||||| | || ||| || || | Sbjct 312801 GTTTAACTTTTTCAAATGAATTGATTTGTAGAGATGAAGGACTGCATACCGATTTTGCAT 312742 Query 269283 GTTTATTATTTACTAATTATCTTTCACACAAACCTTCTCAAGATAGAG-TATACGAA--A 269339 || ||||||| | || || | | |||||||| || | | | | | | ||| | Sbjct 312741 GTCTATTATT--CCAA-CATTTGGAAAACAAACCTGATCCAAAAATTGCTGAAAGAATCA 312685 Query 269340 TTATAGATTCAGCTGTTTCTGTAG-AAACAGA-ATTTCTAACGGAAGCTCTATCTATCGA 269397 ||| || ||| |||||| | | ||| ||| |||| || || || ||| || | | Sbjct 312684 TTACTGA---AGCAGTTTCTATTGAAAAAAGATATTTTGAA--GATGCACTACCTGT--A 312632 Query 269398 TCTT--ATCGGTATGAATAGCAAATCGATGATAGAATATATTAAGTTCGTATCTGATAGA 269455 |||| | || |||||| | ||||| ||||| | | || || |||||||| Sbjct 312631 TCTTTGTTAGGAATGAATGCTGCTTTGATGAATCAATATGTGGAATTTGTTGCTGATAGA 312572 Query 269456 TTGCTGGTGTCTTTAGGGTTTAGTAAAA-AATATAACGTTGAAAATCCGTTTAGTTTTAT 269514 || |||| | || |||| | |||| | || || ||| || || ||| |||||| Sbjct 312571 TTATTGGTTGCATT-GGGTAACGAAAAATATTACAATGTTTCCAACCCATTTGATTTTAT 312513 Query 269515 GGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTCGAGAAGCGGGTAAGTAACTATCA 269574 ||| || || || || | ||| || | |||||||| || || | || | | ||||| Sbjct 312512 GGAAAACATCTCTTTGGCAGGAAAAACAAATTTCTTTGAAAAAAGAGTTTCTGATTATCA 312453 Query 269575 GAAAATGGGTGTAATGTCTA 269594 ||| ||||| ||| ||| Sbjct 312452 AAAAGCAGGTGTCATGGCTA 312433 >seq2 Length=821690 Score = 154 bits (170), Expect = 3e-32 Identities = 147/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||| ||||| || |||||||| | ||||||||| ||||| | |||||| ||| Sbjct 193835 GTGGATTCTTTTTGAATGTTGTAGTCAGACAAAGTTCTACCATCTTCCAATTGTTTACCA 193776 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || | || ||||| ||||| || || |||||||| || || || || ||||| Sbjct 193775 GCAAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCTTTGTCTTGGATTTTGGCTTTG 193716 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||| || ||| || ||||| || |||||||||||||| | ||| Sbjct 193715 ACGTTATCGATGGTGTCGGAAGATTCGACTTCTAGGGTGATAGTCTTACCAGTTAAGGTT 193656 Query 104543 TTTACAAA 104550 || ||||| Sbjct 193655 TTGACAAA 193648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398149211036