Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20osmophila_20[genbank_20GCA_5F001747045.1_202016-09- 27] 17 sequences; 11,458,415 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq15 109 5e-19 seq17 91.5 1e-13 seq2 86.0 6e-12 seq14 82.4 8e-11 >seq15 Length=1932387 Score = 109 bits (120), Expect = 5e-19 Identities = 166/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 38238 aaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAG 38297 |||||||||||||| ||||| ||||| | || || || |||||||| | || ||||| Sbjct 1576641 AAAAAAATGCAAATTTTCGTTAAAACATTGACTGGGAAGACCATCACTTTGGAAGTCGAA 1576700 Query 38298 GCCACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGC 38356 | | |||| | | |||| | || || |||| ||||||||||| ||||| | Sbjct 1576701 TCTTCAGACACGATCGACAACG-TCAAGTCCAAGATCCAAGACAAAGAGGGGATTCCACC 1576759 Query 38357 CGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGA 38416 |||||||| | | || | || || |||||| |||| |||| | || | || Sbjct 1576760 AGACCAACAAAGATTGATCTTTGCTGGTAAACAGTTGGAAGACGGCAGAACTTTGTCGGA 1576819 Query 38417 CTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||||||||| | ||||| ||||| || || | |||||||| || Sbjct 1576820 CTACAACATCCAAAAGGAGTCCACGCTTCATTTAGTCTTGAGATTGAGAGGTGG 1576873 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| | || || ||||||||||| | || |||||| || | Sbjct 1576875 ATGCAAATTTTCGTTAAAACATTGACTGGGAAAACCATCACTTTGGAAGTCGAGTCCTCG 1576934 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || || |||| |||||||| || ||||| | ||||| Sbjct 1576935 GACACGATCGACAACG-TCAAGTCCAAGATCCAAGACAAAGAAGGGATTCCACCAGACCA 1576993 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | | || | || || |||||| |||| |||| | || | |||||||| Sbjct 1576994 ACAAAGATTGATCTTTGCTGGTAAACAGTTGGAAGACGGCAGAACTTTGTCGGACTACAA 1577053 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||||| | ||||| ||||| || || | |||||||| || Sbjct 1577054 CATCCAAAAGGAGTCCACGCTTCATTTAGTTTTGAGATTGAGAGGTGG 1577101 >seq17 Length=834807 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38241 aaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || |||||||| ||||| ||||| | || || |||||||| ||| | || || || | Sbjct 25518 AAGATGCAAATTTTCGTTAAAACTTTGACAGGTAAAACCATTACCTTGGAAGTTGAATCT 25577 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | |||| ||||||| |||||||| || ||||| | ||| Sbjct 25578 TCTGACACTATTGACAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCTGAC 25637 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 ||||| | | || | || || ||||| |||| || | | || | |||||| Sbjct 25638 CAACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGACTAC 25697 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| ||| | || || |||||||| || | |||||||| || Sbjct 25698 AACATTCAAAAAGAATCCACYCTTCATTTGGTTTTGAGATTGAGAGGTGG 25747 >seq2 Length=821690 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 || || ||||| | || || || || |||||| | || ||||| | |||||| | | Sbjct 193648 TTTGTCAAAACCTTAACTGGTAAGACTATCACCCTAGAAGTCGAATCTTCCGACACCATC 193707 Query 38313 CA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCT 38371 | |||| | |||| ||||||| |||||||| || ||||| | |||||||| | | Sbjct 193708 GATAACG-TCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCTGACCAACAAAGATT 193766 Query 38372 CATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAA 38431 || | || || ||||| |||| || | | || | ||||||||||| ||||| Sbjct 193767 GATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGACTACAACATTCAAAA 193826 Query 38432 GGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| | || || |||||||| || | |||||||| || Sbjct 193827 AGAATCCACTCTTCATTTGGTTTTGAGATTGAGAGGTGG 193865 >seq14 Length=1659880 Score = 82.4 bits (90), Expect = 8e-11 Identities = 182/268 (68%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 132875 CCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGA 132934 ||||||| | ||| | | || ||||| ||| ||||| || || || || |||| | Sbjct 312721 CCAAATGTTGGAATAATAGACATGCAAAATCGGTATGCAGTCCTTCATCTCTACAAATCA 312780 Query 132935 GTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGG 132994 ||| || ||||| || || ||||| | || ||| || | |||||| || || | Sbjct 312781 ATTCATTTGAAAAAGTTAAACCTGGCATCAACCCCTTTTTCTTCAACCAAAAGATTGCAG 312840 Query 132995 CGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTC-GCCG 133053 | || || |||||||| || || || || || || || ||||||| | || || Sbjct 312841 CAAAGGATCCAGAAAAGAAAACACCTTCCACAGCAGCAAATGCCACCAATCTTTCAGCAA 312900 Query 133054 AACGTGGCTTCTTTG-CTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCA 133112 || ||| | |||| | || | ||||| | | |||||||| ||||||||||||| Sbjct 312901 AAAGTG-CATCTTCGTCTTGA-ATCCATCTAATAGCCCATTCTGCCTTTTCTTTGATTTG 312958 Query 133113 CGGCATCGTTTCGATGGCGTTCAACAAA 133140 || || ||||| ||||| || || ||| Sbjct 312959 AGGAATTGTTTCAATGGCATTGAATAAA 312986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172693713280