Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20osmophila_20[genbank_20GCA_5F001747045.1_202016-09- 27] 17 sequences; 11,458,415 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq14 453 1e-122 seq16 430 1e-115 >seq14 Length=1659880 Score = 453 bits (502), Expect = 1e-122 Identities = 643/898 (72%), Gaps = 11/898 (1%) Strand=Plus/Plus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||||||||| || | ||||||||||||||||||||| |||||||| | || || || Sbjct 312449 TTTTTGATAATCAGAAACTCTTTTTTCAAAGAAATTTGTTTTTCCTGCCAAAGAGATGTT 312508 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 |||||||||||||||||| || ||||| || ||||| | || ||| | | | Sbjct 312509 TTCCATAAAATCAAATGGGTTGGAAACATTGTAATATTTTTCGTTACCCAATGCAACCAA 312568 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 || |||||| || ||||||| | |||| ||||||| | || ||||||||||| || Sbjct 312569 TAATCTATCAGCAACAAATTCCACATATTGATTCATCAAAGCAGCATTCATTCCTAACAA 312628 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 ||||||||||||||| || | || || ||| ||| ||||| || | || || Sbjct 312629 AGATACAGGTAGTGCATCTTCAAAATATCTTTTTTCAATAGAAACTGCTTCAGTAATGAT 312688 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968 | || | | | | || ||| || | | ||||| || | | ||||||||| Sbjct 312689 TCTTTCAGCAATTTTTGGATCAGGTTTGTTTTCCAAATGTTGGAATAATAGACATGCAAA 312748 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 ||| ||| ||||| || ||||||| ||||||||||| ||||| |||||||| ||||| Sbjct 312749 ATCGGTATGCAGTCCTTCATCTCTACAAATCAATTCATTTGAAAAAGTTAAACCTGGCAT 312808 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088 || || |||| || ||||| || || | |||||| |||||||||||||| | |||||| Sbjct 312809 CAACCCCTTTTTCTTCAACCAAAAGATTGCAGCAAAGGATCCAGAAAAGAAAACACCTTC 312868 Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTT 19148 || || ||||| || || | |||||| || || ||||| | | ||||||||| | Sbjct 312869 CACAGCAGCAAATGCCACCAATCTTTCAGCAAAAAGTGCATCTTCGTCTTGAATCCATCT 312928 Query 19149 CAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208 | ||||| || ||||| | ||| | || ||||| || || | ||| |||| | | Sbjct 312929 AATAGCCCATTCTGCCTTTTCTTTGATTTGAGGAATTGTTTCAATGGCATTGAATA-AAA 312987 Query 19209 CATACGC--TCATCTGTATCTTTAACATATGCATCTATCAATAAACTG--TACATTTCTG 19264 || ||| || | || |||||| | ||| | ||| |||| ||| || || |||| Sbjct 312988 AAT-CGCTTTCTTTTGGATCTTTGATATAAGTATCAATCA--AAAGTGAATAAGTTTCAC 313044 Query 19265 AATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTA 19324 ||||| ||||| || || |||||||||||||||||| | ||||| | || || | Sbjct 313045 TGTGAATGTTTTCCATCATAATTTGAAATCCGTAAAAACATTTGGCTTCAGGAATTTGCA 313104 Query 19325 CTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAA 19384 |||| || ||| |||| ||||||||||||||||| ||||||||| ||||||||||| Sbjct 313105 CTTCTGCACTAAAATTTTCAACCAAATTTTCATTAACAATTCCATCAGAAGCTGCAAAAA 313164 Query 19385 ATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAAT---GTATTCCAATCAT 19441 ||||||| || |||| ||| | |||||| | | | | |||||||||| | Sbjct 313165 ATGCTAAAACTCTACTAATGAAAAATCTTTCATTTTCATTCATTCTGTTATTCCAATCGT 313224 Query 19442 TAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTAT 19501 | |||||| |||| ||| | |||||| | |||||||||||||| ||||| ||||| Sbjct 313225 GCAAATCTTTGGATAGATCAATTTCTTCTGCAGTCCAAAAAGAAGCTTCTGCACGTTTAT 313284 Query 19502 ACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTC 19559 | | ||| || ||| |||||| || ||||| | ||||||||| |||| ||||| Sbjct 313285 AAGCTTGCCAAATTTCATGATATTTGATTGGAAACAAAACAAATCTTCTTTTGTTTTC 313342 >seq16 Length=1651669 Score = 430 bits (476), Expect = 1e-115 Identities = 887/1310 (68%), Gaps = 40/1310 (3%) Strand=Plus/Minus Query 47918 ATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTG 47977 || || ||||| | |||||| ||| | ||| ||||||| || ||||| |||| Sbjct 930361 ATCAGAATATTCCACAATTTCACAACACAAATTGGATGATTTGATGGTTCCCAAGTTTTT 930302 Query 47978 ATGATT--ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCT 48035 || || ||| |||||||| || || ||||||| ||||| ||||| || |||||| Sbjct 930301 TTGGTTGGATTTT--TTGTTACAAGCATCTTTGTAAACAATAAATGGTGTACCTGTTTCT 930244 Query 48036 ATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTA 48095 | || | ||| | || | | ||| | | ||| || || |||| || | Sbjct 930243 GTTTGTGCTTCCAAAATGGCATACCATAATTTTTGAGCTTTAATTGTTTTTCTACCTCTT 930184 Query 48096 TTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAAC 48155 || || | ||||| | ||||| || ||||| || | ||||| |||| | || Sbjct 930183 CCTTCTTGAACATATTTGTTGTATAATTTTTCAAAATCTTTACCATAAACATCACTCAAA 930124 Query 48156 CCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATA 48215 |||||| |||| | ||| | | |||| |||||| || | ||| ||| | |||| Sbjct 930123 CCAGGAGCTTCACTTGGAGAAAATAATGTCCAATCTGAATTTTCTTTAACTTTTTGCATA 930064 Query 48216 AATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCA 48275 |||| |||||| | ||| | || ||| ||||| || | ||| | |||||| || ||| Sbjct 930063 AATAAATCTGGAACCCACAAGGCAGGAAACAAATCTCTTGCTCTAATTTCTTCTTTACCA 930004 Query 48276 CTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATT 48335 ||| | || |||| ||| || | |||||| |||||||||||||||||| | Sbjct 930003 TGATTTTTCCGAATATCAATAAAATCAAAAATATCACTATGCCATGGTTCTAAATAAAGA 929944 Query 48336 GCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAA 48395 || | |||| |||| ||||||||| |||||||| | |||||| |||||||| || || Sbjct 929943 GCAAAAGCACCAGGTCTTTTATTACCACCTTGATCAACATATCTTGCAGTATTATTGAAA 929884 Query 48396 ACTCTTAACATTGGGA-CAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCC 48454 ||||| | |||||| | |||| ||||| || | || || ||||| | |||||| || Sbjct 929883 ACTCTAATCATTGGAATCAAT-CCATTAGAAGTTCCGTTTGTTCCAGCAATATATGAACC 929825 Query 48455 ACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGC 48514 | | ||| |||||| ||| || ||| || ||||| || ||||||| || | ||| Sbjct 929824 TGTTGATCTAATATTATGAATATGAAGACCAATTCCACCAGCAGTTTTAGAAATCAAAGC 929765 Query 48515 ACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAA 48574 ||| ||| | || ||||||||||| || || ||||||| ||||| | ||||| Sbjct 929764 ACATTCTTTTAAAGTGTCATAAATTCCATCAATTGAATCATCTTTCATAGCAACAAGAAA 929705 Query 48575 ACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAAT 48634 ||| ||||||||| || ||| |||| ||| |||||||||||||| |||||| | Sbjct 929704 ACATGAAGACATTTGTGGTCTTGGAGTACCTGCATTGAATAATGTTGGAGAAGCATGAGT 929645 Query 48635 AAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTG--A 48692 || || | ||| | ||| ||||| ||||| | ||| || ||||| ||| | Sbjct 929644 GAAATATCTTAATGACATCAAATTATAAGTTTCCAAAACTTTYTCAATATC--ATTACCA 929587 Query 48693 TGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTT 48752 || || || | || || | ||| | || || ||| ||||||||| |||||| | ||| Sbjct 929586 TGAATTCCAACAGCAACTCTCATAATCAAATGTTGTGGTCTTTCAGCAATTTGGCCATTG 929527 Query 48753 ATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCG 48812 ||| | || | ||| ||| |||| || ||||||||||||||||| |||||| ||| || Sbjct 929526 ATTCTTAATAAATAAGATCTTTCTAAAGTTTTAAAACCAAAATAATTGTATTGAAAATCT 929467 Query 48813 TTATCATTAATAATTGATGAATTTATTCTTTCCTTATGTTT------------ATATACT 48860 |||||| || ||| | ||||| | || |||| ||| ||| || Sbjct 929466 CTATCATAAACAATAGCACTATTTAATACATCTTTATTTTTTTCAACAATTTGATAAACG 929407 Query 48861 ACATC------CATTACATTTTTTGATATAATTGATTCCT---TGTAAAGATCT---TC- 48907 |||| |||| | |||| || | || ||| | | |||| || | || Sbjct 929406 TCATCACTAATCATTGGAGATTTTAATCCATTTTTTTCATTAATATAAAAATATAAATCA 929347 Query 48908 --TACAACATCACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTA 48965 | ||| | | |||| |||||| |||| |||||| | ||| || || | ||||| Sbjct 929346 GAAATAACTTGAGAAAATTGTTTTTTAGTTTGTTTATGTAAATTGGAAATTGCAATTCTT 929287 Query 48966 GCAGCTAATATAGCATAATCTGGATGAATTGTTGTACATGT-ACTAGATATTTCTGCTGC 49024 ||||| ||| | |||||||| |||||||| || || ||| | | | || |||| || || Sbjct 929286 GCAGCCAATGTTGCATAATCAGGATGAATAGTAGT-CATATAAGCACATGTTTCAGCAGC 929228 Query 49025 TAATATATCTAATTCTTTAGTAGTTACACCTGTATATATTCCTTGAATAACTTTCATTGC 49084 || |||| ||||| ||||||| || ||| ||| | || ||| | | | || Sbjct 929227 CAAATTATCCAATTCAATAGTAGTAACCCCTTCATAAACACCAGAAATGATTCTTTGTGT 929168 Query 49085 TATATTTACTGGATCTATATGATCCATATCCAGTCCATAACATAAtttttttATTCTAGA 49144 ||| || ||||| ||||| | ||||| |||||||||||| | ||||||||| Sbjct 929167 AATAGAAACAGGATCAATATGGTTTGGATCCAAACCATAACATAATCTGGCTATTCTAGA 929108 Query 49145 TGTAATTTTATCAAACATTATATTCTCTTTACGACCGTCACGTTTTATAA 49194 || ||||||||||| | ||||| |||||||| | |||||||| Sbjct 929107 AGTGATTTTATCAAATTGAACCGGTTCTTTCCGACCGTCTC-TTTTATAA 929059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108680551880