Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20osmophila_20[genbank_20GCA_5F001747045.1_202016-09- 27] 17 sequences; 11,458,415 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq14 288 1e-72 seq15 161 1e-34 seq17 159 5e-34 seq2 138 2e-27 >seq14 Length=1659880 Score = 288 bits (318), Expect = 1e-72 Identities = 641/947 (68%), Gaps = 22/947 (2%) Strand=Plus/Plus Query 17861 GCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATT 17920 ||||||| || || ||| |||| || ||||||||||| |||||| |||| || || Sbjct 312447 GCTTTTTGATAATCAGAAACTCTTTTTTCAAAGAAATTTGTTTTTCCTGCCAAAGAGATG 312506 Query 17921 AAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTAT 17980 | ||||||||||||||| || | || ||||||||||| | ||| | Sbjct 312507 TTTTCCATAAAATCAAATGGGTTGGAAACATTGTAATATTTTTCGTTACCCAATGCAACC 312566 Query 17981 AATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGT 18040 ||||||||||| || |||||||| |||||||| ||||||| | |||||| |||| Sbjct 312567 AATAATCTATCAGCAACAAATTCCACATATTGATTCATCAAAGCAGCATTCATTCCTAAC 312626 Query 18041 AGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATT 18100 | | |||||| ||||| || | || ||| || || ||| | ||| | Sbjct 312627 AAAGATACAGGTAGTGCATCTTCAAAATATCTTTTTTCAATAGAAACTG---CTTCAGTA 312683 Query 18101 ATGTTTATTACCCTAGATTTTGG--CAA-TTTATTAATTATGTGATTATAATATAATAAA 18157 ||| || || | | |||||| || ||| || | || || |||| ||| | Sbjct 312684 ATGATTCTTTCAGCAATTTTTGGATCAGGTTTGTTTTCCAAATG-TTGGAATA--ATAGA 312740 Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 || |||||||| || || | ||||||||||| | || ||||| || ||| ||||| Sbjct 312741 CATGCAAAATCGGTATGCAGTCCTTCATCTCTACAAATCAATTCATTTGAAAAAGTTAAA 312800 Query 18218 CCGGGCATTATACCTCtttttttt-AGCCAAAATATCGATGCGAAACTACTAGAAAAGAA 18276 || ||||| | ||| |||||| || | |||||| || | || || | ||||||||| Sbjct 312801 CCTGGCATCA-ACCCCTTTTTCTTCAACCAAAAGATTGCAGCAAAGGATCCAGAAAAGAA 312859 Query 18277 TATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCA 18335 | ||| || || ||| || || || | ||||||||||||||| || | || || Sbjct 312860 AACACCTTCCACAGCA-GCAAATGCCACCAATCTTTCAGCAAAAA-GTGCATCTTCGTCT 312917 Query 18336 -GTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCA 18394 | |||||| | ||||||||| | | || || || | || || ||| Sbjct 312918 TGAATCCATCTAATAGCCCATTCTGCCTTTTCTTTGATTTGAGGAATTGTTTCAATGGCA 312977 Query 18395 TTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATAC 18454 || || ||| ||| ||||||| | |||||| |||||||| || || || | ||||| Sbjct 312978 TTGAATAAAAAATCGCTTTCTTTTGGATCTTTGATATAAGTATCAATCAAAAGTGAATAA 313037 Query 18455 ATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGA 18514 ||||| || ||| ||||||| || ||||| | ||||| || | || || ||| Sbjct 313038 GTTTCACTGTGAATGTTTTCCATCATAATTTGAAATCCGTAAAAACATTTGGCTTCAGGA 313097 Query 18515 TATTGAATCTC-GCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGA 18573 ||| | || || |||||| |||| |||||||| |||||||| || || |||| || Sbjct 313098 ATTTGCACTTCTGCACTAAAAT-TTTCAACCAAATTTTCATTAACAATTCCATCAGAAGC 313156 Query 18574 TGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTT--- 18630 ||| |||||||| ||||| |||||||| | ||||||| || || | |||| Sbjct 313157 TGCAAAAAATGCTAAAACTCTACTAATGAAAAATCTTTCATTTTCATTCATTCTGTTATT 313216 Query 18631 CCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGC 18690 ||| || | | |||||| |||||||||| |||||| | ||||||||||| | ||| || Sbjct 313217 CCAATCGTGCAAATCTTTGGATAGATCAATTTCTTCTGCAGTCCAAAAAGAAGCTTCTGC 313276 Query 18691 CTGTTTGTACATTTTATAAATATCTTCATGTTGTATAGGAAATAATATATATCGTTTATA 18750 |||| || || |||| || | || || || ||||| || | | ||| | | | Sbjct 313277 ACGTTTATAAGCTTGCCAAATTTCATGATATTTGATTGGAAACAAAACAAATCTTCTTTT 313336 Query 18751 ATTTTTTATTAACATAGGTTCTTCCATTTTTCTAATATTATTAATTT 18797 |||| | |||| ||||| | |||||| ||| | ||||||| Sbjct 313337 GTTTTCCACCAACAAGGGTTCGT--TTTTTTCAAATTCTTTTAATTT 313381 >seq15 Length=1932387 Score = 161 bits (178), Expect = 1e-34 Identities = 178/235 (76%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 155817 AATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAA 155876 || ||||||||||| || |||||||||||||||| || || || || || ||||||||| Sbjct 1576641 AAAAAAATGCAAATTTTCGTTAAAACATTGACTGGGAAGACCATCACTTTGGAAGTCGAA 1576700 Query 155877 GATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCA 155936 ||| || | || ||||| || || || ||||| ||||| || || || ||| Sbjct 1576701 TCTTCAGACACGATCGACAACGTCAAGTCCAAGATCCAAGACAAAGAGGGGATTCCACCA 1576760 Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGAT 155996 || |||||||||||||| | ||| ||||| ||| | ||||| ||||||||| || || Sbjct 1576761 GACCAACAAAGATTGATCTTTGCTGGTAAACAGTTGGAAGACGGCAGAACTTTGTCGGAC 1576820 Query 155997 TATAATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || | | ||||||| ||| | |||||||||||||| || ||||| ||||| || Sbjct 1576821 TACA--ACATCCAAAAGGAGTCCACGCTTCATTTAGTCTTGAGATTGAGAGGTGG 1576873 Score = 159 bits (176), Expect = 5e-34 Identities = 175/231 (76%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || |||||||||||||||| ||||| || || || |||||||| || Sbjct 1576875 ATGCAAATTTTCGTTAAAACATTGACTGGGAAAACCATCACTTTGGAAGTCGAGTCCTCG 1576934 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||| || || || ||||| |||||||| || || ||||| ||| Sbjct 1576935 GACACGATCGACAACGTCAAGTCCAAGATCCAAGACAAAGAAGGGATTCCACCAGACCAA 1576994 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||| | ||| ||||| ||| | ||||| ||||||||| || || || | Sbjct 1576995 CAAAGATTGATCTTTGCTGGTAAACAGTTGGAAGACGGCAGAACTTTGTCGGACTACA-- 1577052 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 | ||||||| ||| | |||||||||||||| || ||||| ||||| |||| Sbjct 1577053 ACATCCAAAAGGAGTCCACGCTTCATTTAGTTTTGAGATTGAGAGGTGGTG 1577103 >seq17 Length=834807 Score = 159 bits (176), Expect = 5e-34 Identities = 179/238 (75%), Gaps = 1/238 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || |||||||| || ||||||| ||||| || ||||| ||||| || ||||| ||| | Sbjct 25518 AAGATGCAAATTTTCGTTAAAACTTTGACAGGTAAAACCATTACCTTGGAAGTTGAATCT 25577 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 ||||| | |||| || || ||| ||||| ||||| |||||||| || || || || Sbjct 25578 TCTGACACTATTGACAATGTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCTGAC 25637 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||||||||||| | ||| ||||| || | |||||| |||||||| || || || Sbjct 25638 CAACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGACTAC 25697 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT-GTAAAA 156056 || || ||||| | || |||||||| || || ||||| ||||| ||| |||||| Sbjct 25698 AACATTCAAAAAGAATCCACYCTTCATTTGGTTTTGAGATTGAGAGGTGGTGGTAAAA 25755 >seq2 Length=821690 Score = 138 bits (152), Expect = 2e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 155832 TTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATT 155891 ||| | ||||| || ||||| || ||||| || ||||||||||| ||| || | || Sbjct 193648 TTTGTCAAAACCTTAACTGGTAAGACTATCACCCTAGAAGTCGAATCTTCCGACACCATC 193707 Query 155892 TTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTG 155951 ||||| ||| ||||| ||||| |||||||| || || || || |||||||||||| Sbjct 193708 GATAACGTCAAAGCCAAAATCCAAGACAAAGAAGGTATTCCACCTGACCAACAAAGATTG 193767 Query 155952 ATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA 156011 || | ||| ||||| || | |||||| |||||||| || || || || || ||| Sbjct 193768 ATCTTTGCTGGTAAACAATTGGAAGATGGTAGAACTTTGTCTGACTACAACATTCAAAAA 193827 Query 156012 GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGT 156052 || | || |||||||| || || ||||| ||||| ||||| Sbjct 193828 GAATCCACTCTTCATTTGGTTTTGAGATTGAGAGGTGGTGT 193868 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871844477200