Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20osmophila_20[genbank_20GCA_5F001747045.1_202016-09- 27] 17 sequences; 11,458,415 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq14 199 8e-46 seq2 165 2e-35 seq17 161 2e-34 seq15 138 2e-27 >seq14 Length=1659880 Score = 199 bits (220), Expect = 8e-46 Identities = 539/827 (65%), Gaps = 18/827 (2%) Strand=Plus/Plus Query 49592 CATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACATATAATAA 49651 ||||||||||||||| || ||| ||||||||||| |||| || ||||| Sbjct 312512 CATAAAATCAAATGGGTTGGAAACATTGTAATATTTTTCGTTACCCAATGCAACCAATAA 312571 Query 49652 TCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAATTT 49711 |||||| || |||||||| |||||||| ||| || || |||||| || || || Sbjct 312572 TCTATCAGCAACAAATTCCACATATTGATTCATCAAAGCAGCATTCATTCCTAACAAAGA 312631 Query 49712 AAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattatcat 49771 | |||| |||||| |||| | || |||||| || || |||| |||| || | Sbjct 312632 TACAGGTAGTGCATCTTCAAAATATCTTTTTTCAATAGAAACTGCTTCAGTAATGATTCT 312691 Query 49772 aattatattattttttgataa--tttatatttaatatgattcgcatatattaaACATGCA 49829 || |||||| ||| | ||| | || | ||| | | | ||| || ||||||| Sbjct 312692 --TTCAGCAATTTTTGGATCAGGTTTGTTTTCCAAATGTT--GGA-ATAATAGACATGCA 312746 Query 49830 AAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGC 49889 ||||| ||||| | || || || ||| | || |||||||| ||||||||| |||||| Sbjct 312747 AAATCGGTATGCAGTCCTTCATCTCTACAAATCAATTCATTTGAAAAAGTTAAACCTGGC 312806 Query 49890 ATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCC 49949 || || || | || || | |||||| |||| ||||| | ||||||||| | ||| Sbjct 312807 ATCAACCCCTTTTTCTTCAACCAAAAGATTGCAGCAAAGGATCCAGAAAAGAAAACACCT 312866 Query 49950 TCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAATATCCAA 50009 || ||| |||||||| | | |||| | |||| | | | || ||| ||||| Sbjct 312867 TCCACAGCAGCAAATGCCACCAATCTTTCAGCAAAAAGTGCATCTTCGTCTTGAATCCAT 312926 Query 50010 TTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATAAT 50069 | |||||||| ||||| |||| |||||| ||| || |||| || || || ||||| Sbjct 312927 CTAATAGCCCATTCTGCCTTTTCTTTGATTTGAGGAATTGTTTCAATGGCATTGAATAAA 312986 Query 50070 TCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACATTTCA--- 50126 || |||| | || || | ||||| ||||| Sbjct 312987 AAATCGCTTTCTTTTGGATCTTTGATATAAGTATCAATCAAAAGTGAATAAGTTTCACTG 313046 Query 50127 -GAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATACTG 50185 |||||| |||||| ||||||||| ||||| | | ||||| | | || Sbjct 313047 TGAATGT----TTTCCATCATAATTTGAAATCCGTAAAAACATTTGGCTTCAGGAATTTG 313102 Query 50186 AACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAA 50245 ||||| | | || |||||| ||||| ||| ||||| |||||||| ||||| || Sbjct 313103 CACTTCTGCACTAAAATTTTCAACCAAATTTTCATTAACAATTCCATCAGAAGCTGCAAA 313162 Query 50246 GAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTT---TTAAATTTTCCCAAGA 50302 ||||||||||| |||| ||| | ||||||| || | || || | |||| Sbjct 313163 AAATGCTAAAACTCTACTAATGAAAAATCTTTCATTTTCATTCATTCTGTTATTCCAATC 313222 Query 50303 TTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTTTT 50362 | | ||| || |||| ||| | ||||||| |||||||| || ||| | | ||| Sbjct 313223 GTGCAAATCTTTGGATAGATCAATTTCTTCTGCAGTCCAAAAAGAAGCTTCTGCACGTTT 313282 Query 50363 ATACATTTGATATATATCAAAATGTTCAATGGGAAATAGTACATATC 50409 ||| ||| | || ||| || || || ||||| | ||| ||| Sbjct 313283 ATAAGCTTGCCAAATTTCATGATATTTGATTGGAAACAAAACAAATC 313329 >seq2 Length=821690 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| ||||| ||||||||| | | || || ||||| | ||| | ||||| || | Sbjct 193876 GTTCAATAACACCACCTCTCAATCTCAAAACCAAATGAAGAGTGGATTCTTTTTGAATGT 193817 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | || ||||| || |||| |||| ||||||||||||||||||||||| ||||| |||| Sbjct 193816 TGTAGTCAGACAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTT 193757 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 | |||||||| || |||||||| ||||| ||||| ||| || ||| || | || | Sbjct 193756 GGTCAGGTGGAATACCTTCTTTGTCTTGGATTTTGGCTTTGACGTTATCGATGGTGTCGG 193697 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAA 192527 | ||||| |||||||| || || || ||||||||||| ||||| | ||| Sbjct 193696 AAGATTCGACTTCTAGGGTGATAGTCTTACCAGTTAAGGTTTTGACAAA 193648 >seq17 Length=834807 Score = 161 bits (178), Expect = 2e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | | || || ||||| | || | ||||| || || || ||||| Sbjct 25748 ACCACCTCTCAATCTCAAAACCAAATGAAGRGTGGATTCTTTTTGAATGTTGTAGTCAGA 25689 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || |||| |||| ||||||||||||||||||||||| ||||| ||||| |||||||| Sbjct 25688 CAAAGTTCTACCATCTTCCAATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 25629 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || |||||||| ||||| ||||| ||| ||||| |||| || || ||||| || Sbjct 25628 AATACCTTCTTTGTCTTGGATTTTGGCTTTGACATTGTCAATAGTGTCAGAAGATTCAAC 25569 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||| | |||||||||||||| || || ||||||| || || ||||| || Sbjct 25568 TTCCAAGGTAATGGTTTTACCTGTCAAAGTTTTAACGAAAATTTGCATCTT 25518 >seq15 Length=1932387 Score = 138 bits (152), Expect = 2e-27 Identities = 172/236 (73%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| | | || |||||||| | || | ||| || ||| || || || Sbjct 1576876 ATCCCACCTCTCAATCTCAAGACTAAATGAAGCGTGGACTCCTTTTGGATGTTGTAGTCC 1576817 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || || |||| | || ||||| ||||||||||||||||| ||||| ||||| || ||| Sbjct 1576816 GACAAAGTTCTGCCGTCTTCCAACTGTTTACCAGCAAAGATCAATCTTTGTTGGTCTGGT 1576757 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || ||||| ||||| || || || || || || | ||||| ||||| Sbjct 1576756 GGAATCCCCTCTTTGTCTTGGATCTTGGACTTGACGTTGTCGATCGTGTCTGAAGATTCG 1576697 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTTATT 192542 ||||| | ||| ||||| || ||||| |||||||||| || || |||||||| || Sbjct 1576696 ACTTCCAAAGTGATGGTCTTCCCAGTCAATGTTTTAACGAAAATTTGCATTTTTTT 1576641 Score = 132 bits (146), Expect = 9e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | | || |||||||| | || | ||| || ||| || || || || Sbjct 1577102 ACCACCTCTCAATCTCAAAACTAAATGAAGCGTGGACTCCTTTTGGATGTTGTAGTCCGA 1577043 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || |||| | || ||||| ||||||||||||||||| ||||| ||||| || ||||| Sbjct 1577042 CAAAGTTCTGCCGTCTTCCAACTGTTTACCAGCAAAGATCAATCTTTGTTGGTCTGGTGG 1576983 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || |||||||| ||||| || || || || || || | || || || || || Sbjct 1576982 AATCCCTTCTTTGTCTTGGATCTTGGACTTGACGTTGTCGATCGTGTCCGAGGACTCGAC 1576923 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| | ||| |||||||| ||||| |||||||||| || || ||||| Sbjct 1576922 TTCCAAAGTGATGGTTTTCCCAGTCAATGTTTTAACGAAAATTTGCAT 1576875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479785567950