Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20osmophila_20[genbank_20GCA_5F001747045.1_202016-09- 27] 17 sequences; 11,458,415 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq14 338 5e-88 seq15 194 1e-44 seq16 87.8 1e-12 >seq14 Length=1659880 Score = 338 bits (374), Expect = 5e-88 Identities = 623/892 (70%), Gaps = 31/892 (3%) Strand=Plus/Minus Query 43697 AGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAG 43756 || ||||| |||||||||| |||||||||| || |||||| || ||| ||| | Sbjct 313330 AGATTTGTTTTGTTTCCAATCAAATATCATGAAATTTGGCAAGCTTATAAACGTGCAGAA 313271 Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCAC-ATTGGATTGC 43815 || || |||||||| ||||||||| ||||| | | ||||| || |||| |||||| | Sbjct 313270 GCTTCTTTTTGGACTGCAGAAGAAATTGATCTATCCAAAGATTT-GCACGATTGGAATAA 313212 Query 43816 ATTAA--AACCACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAG 43872 || || | || |||| | ||| || | ||||| || |||||||| || Sbjct 313211 CAGAATGAATGAAAATGAAAGATTTTTCATTAGTAGAGTTTTAGCATTTTTTGCAGCTTC 313152 Query 43873 CGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT-GCGCAAGAAGTTCAATTACCAG 43931 || || || || ||||||||||||||| ||| | ||| ||||| ||| | || | Sbjct 313151 TGATGGAATTGTTAATGAAAATTTGGTTGAAAATTTTAGTGCA-GAAGTGCAAATTCCTG 313093 Query 43932 AAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACA 43991 |||| ||||||||| || ||||||||| || ||||| ||||| |||| || Sbjct 313092 AAGCCAAATGTTTTTACGGATTTCAAATTATGATGGAAAACATTCACAGTGAAACTTATT 313033 Query 43992 GTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTA----AT 44047 ||| |||| ||||| || ||||||||| || |||| | ||||| |||| || Sbjct 313032 CACTTTTGATTGATACTTATATCAAAGATC--CAAAAGAA--AGCGATTTTTTATTCAAT 312977 Query 44048 GCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATA-AA 44106 || || |||||| | ||| || ||| | || ||||| ||||| ||| |||||| || Sbjct 312976 GCCATTGAAACAATTCCTCAAATCAAAGAAAAGGCAGAATGGGCTATTAGATGGATTCAA 312917 Query 44107 TTCAAATGATTC---TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTT 44163 | || ||| | ||||| ||| || | || || ||||| | ||||||||| |||| Sbjct 312916 GACGAA-GATGCACTTTTTGCTGAAAGATTGGTGGCATTTGCTGCTGTGGAAGGTGTTTT 312858 Query 44164 CTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTT 44223 |||||| ||||| ||||| || || |||||||| |||||| || |||||||| || || Sbjct 312857 CTTTTCTGGATCCTTTGCTGCAATCTTTTGGTTGAAGAAAAAGGGGTTGATGCCAGGTTT 312798 Query 44224 GACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTT 44283 || ||||||||||| || || || | |||||||| | ||| ||||||||| || | Sbjct 312797 AACTTTTTCAAATGAATTGATTTGTAGAGATGAAGGACTGCATACCGATTTTGCATGTCT 312738 Query 44284 GTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGA---TATTGT 44340 ||| | | || | ||| | | || || | || | | |||| | || || | Sbjct 312737 ATTATTCCAACAT-TTGGAAA--ACAAACC-TGATCCA--AAAATTGCTGAAAGAATCAT 312684 Query 44341 TGTAGAGGCAGTAAAGATAG-AACAAGAATTTATGACAACAGCATTACCTGTAAATTTAA 44399 | || ||||| || | || |||| || ||| | ||| |||||||| ||| Sbjct 312683 TACTGAAGCAGTTTCTATTGAAAAAAGATATTTTGA-AGATGCACTACCTGTATCTTTGT 312625 Query 44400 TAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTT 44459 |||||||||||| ||||||||| |||||| | |||| |||| ||| | ||| | Sbjct 312624 TAGGAATGAATGCTGCTTTGATGAATCAATATGTGGAATTTGTTGCTGATAGATTATTGG 312565 Query 44460 TGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATA 44519 | | | ||||| ||| ||| | || | ||| ||||| ||||||||||||||||| | Sbjct 312564 TTGCATTGGGTAACGAAAAATATTACAATGTTTCCAACCCATTTGATTTTATGGAAAACA 312505 Query 44520 TTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCA 44571 | || |||| ||| |||||||| || ||||||||| | ||| || ||||| Sbjct 312504 TCTCTTTGGCAGGAAAAACAAATTTCTTTGAAAAAAGAGTTTCTGATTATCA 312453 >seq15 Length=1932387 Score = 194 bits (214), Expect = 1e-44 Identities = 382/559 (68%), Gaps = 16/559 (3%) Strand=Plus/Minus Query 19232 AAGACATGCAAATTGGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTG 19291 |||||||| |||| || ||| ||||| ||| || |||||||| | |||||||||| Sbjct 1078659 AAGACATGGGTGTTGGTGGTTTGGACAAAGAATTTACTCAAATCTTTAGAAGAGCATTTG 1078600 Query 19292 TGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGG-ATGTAAACATGTTCGTGGA 19350 ||| | ||||| | ||||||||||| ||||||| || | ||||| || Sbjct 1078599 CCTCGAGAATTTTTCCACCAGATGTCATTGCTAAATTGGGGATCTCG-CATGTCAAAGGT 1078541 Query 19351 CTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAA 19410 ||| | | | ||| ||||| ||| || ||||| || ||||| ||| || || ||| Sbjct 1078540 CTTCTTTTGTTTGGTCCACCTGGTACAGGTAAAACTTTGATTGCTAGAAAAATTGGTACC 1078481 Query 19411 TTACTTA---CAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATAT 19467 | |||| | || ||||| |||||||| |||||||||||||| || | ||||| Sbjct 1078480 ATGCTTAATGCGAAGGAACCT---AAAATTGTCAATGGTCCTGAAATTTTGAGCAAATAC 1078424 Query 19468 GTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAA 19527 || || || ||||||||| | || ||||||| ||||| |||| |||| | ||| Sbjct 1078423 GTTGGGTCTTCTGAAGAAAATATTAGAAATTTGTTTAAAGACGCAGAAGCAGAATACAAA 1078364 Query 19528 CGTTTAGGGCGCA-AAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTG 19586 | | || | | |||||||| | |||||||| || | ||||||||||| | | | Sbjct 1078363 -GCAAAAGGAGAAGAAAGTTCTCTACACATTATCATTTTTGATGAATTGGATTCTGTTTT 1078305 Query 19587 TAAGCAAAGAGGTTC------TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACT 19640 ||||| || || || || || | || || ||||| ||| || |||||| | Sbjct 1078304 CAAGCAGAGGGGGTCTAGAGGTGATGGGACCGGGGTTGGTGACAATGTCGTGAATCAATT 1078245 Query 19641 CCTGTCAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAA 19700 || | ||| | || |||||| | || |||| || ||||| |||||||| ||||| || Sbjct 1078244 GTTGGCTAAAATGGATGGTGTTGATCAGTTGAACAACATTTTGGTTATTGGTATGACCAA 1078185 Query 19701 TAGACTGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGA 19760 | | || || || || | |||||| || |||| ||| | || || | | | || Sbjct 1078184 TCGTAAAGATTTGATTGATAACGCCTTGTTGAGACCAGGTAGATTTGAGGTTCAAGTGGA 1078125 Query 19761 AATTAACTTACCCGATGAA 19779 ||| || || || |||||| Sbjct 1078124 AATCAAATTGCCAGATGAA 1078106 >seq16 Length=1651669 Score = 87.8 bits (96), Expect = 1e-12 Identities = 290/451 (64%), Gaps = 35/451 (8%) Strand=Plus/Plus Query 40863 GAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGAC 40922 |||||||||||||||||||||||||| ||||| | | |||||||||||||| |||| | Sbjct 123938 GAAGGTGATCTTGGTCCTGTTTATGGGTTTCAATGGAGACATTTTGGAGCAGAATACAAA 123997 Query 40923 ACTATGTACTCTGATTATACCAATAAAGGAATGG------ATCAATTA-CAGTGCGTTAT 40975 || |||| || | | | || | || || ||||| | | | | ||||| Sbjct 123998 AC-ATGT-----GACGACAACTATGATGGCCAGGGCTATGATCAACTGGCTGAG-GTTAT 124050 Query 40976 AGATACGATTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAAC 41035 | | | | ||| | | || | | || | || || ||| | || |||||||| | Sbjct 124051 ATACAAACTGAAACACAACCCATACGACAGAAGAATTATCTTGAGTGCTTGGAACCCTCC 124110 Query 41036 GGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGC-- 41093 || | | ||||| ||||| ||||| ||| | || |||| ||||| || || Sbjct 124111 AGATTTCAAAAAAATGGCTTTGCCTCCTTGCCATGTTTTCAGTCAATTTTATGTGAGCTT 124170 Query 41094 -------------AATGG------TGAACTGTCATGTCAATTGTATCAAAGATCAGGTGA 41134 || | | |||| |||||| | || |||||||| |||| Sbjct 124171 TCCTAAAGAAGAAAACGCCCGTCCTAAACTTTCATGTGTTCTATACCAAAGATCTTGTGA 124230 Query 41135 CATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGC 41194 ||||| |||||||||| || ||||| || ||||| ||||| || | |||||||| Sbjct 124231 TATGGGTTTAGGGGTCCCATTCAACATTGCATCCTATGCACTGCTAACTAAAATGATTGC 124290 Query 41195 ACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTA 41254 | ||| || | | ||||||||||| ||||||| || || || | || |||| Sbjct 124291 CAAAGTTTGTGATATGGATCCTGGTGAATTCATTCACACTTTGGGTGACGCCCACGTTTA 124350 Query 41255 CATTAATCACATAGAGCCGTTAACAGAACAA 41285 | ||||| | || | || | ||||||| Sbjct 124351 TAAAGATCACGTTGACGCTTTGAAAGAACAA 124381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455917652085