Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20uvarum_20[genbank_20GCA_5F000775265.3_202016-04-21] 41 sequences; 8,099,637 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq13 154 1e-32 seq4 147 2e-30 >seq13 Length=415809 Score = 154 bits (170), Expect = 1e-32 Identities = 403/611 (66%), Gaps = 13/611 (2%) Strand=Plus/Minus Query 57537 AGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAA 57596 ||||| || | || || ||| ||| ||||| |||||| | || || | || ||| Sbjct 173914 AGATTCGTTTTATTCCCAATTAAATTCCCAGAAATTTGGGAAGCCTATAAGAGAGCCGAA 173855 Query 57597 GCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCC 57656 || || || ||||||| |||||| | || ||||||||||| | ||||||| || | Sbjct 173854 GCTTCTTTCTGGACCGCTGAAGAAATCGATTTGTCTAAGGATTTACACGATTGGAATAAC 173795 Query 57657 C---TCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCC 57713 | || ||| ||| ||| ||| ||| | || ||||| || || || || || Sbjct 173794 AGAATGAATGAAAATGAAAGATTTTTCATTTCAAGAGTCTTGGCTTTCTTTGCTGCTTCT 173735 Query 57714 GATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAG 57773 ||||||||||| || || || ||||| |||| || || ||||| ||| | | || Sbjct 173734 GATGGTATTGTCAATGAAAACTTGGTTGAAAATTTCTCTGCTGAAGTTCAAATTCCAGAA 173675 Query 57774 GCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCG 57833 || | || || ||||| || ||| | || |||||| | || || |||| ||||| Sbjct 173674 GCTAAGTGTTTCTACGGTTTCCAAATTATGATGGAAAACATTCACTCTGAAACTTATTCT 173615 Query 57834 CTACTCATCGATACGTACGTGAAGGA--CAACGACGAGAAACGTAGACTGTTCAACGCGA 57891 || | | || || ||| | ||||| ||| | || || | | || ||||| | Sbjct 173614 TTATTATTAGACACATACATCAAGGATCCAA--AGGAAAATGATTTCTTATTAAACGCTA 173557 Query 57892 TCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCG 57951 | ||||| || || | || | ||||| || ||| | || | |||||| || | Sbjct 173556 TAGAAACTATTCCTGAAATTAAGGAAAAGGCTGAATGGGCTATTAGATGGATTCAA---G 173500 Query 57952 CCACGGCCAC---GTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCT 58008 | || | | ||| || || || || | || || || || || |||||| | || | Sbjct 173499 ATAAGGACGCTTTGTTTGCTGAAAGACTGGTTGCTTTTGCTGCTGTTGAAGGTGTCTTTT 173440 Query 58009 TTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGA 58068 | || || ||||| || || || ||| |||||||| || ||||||| || ||| Sbjct 173439 TCTCTGGTTCATTTGCTGCTATCTTCTGGTTGAAGAAAAAGGGTTTGATGCCTGGTTTGA 173380 Query 58069 CGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAA 58128 | || |||||| ||||| | | || || ||| | |||||||| ||||| || ||| Sbjct 173379 CTTTCTCCAACGAATTGATCTGTAGAGATGAAGGTTTACATACTGACTTTGCCTGTCTAT 173320 Query 58129 TGTACTCTCAC 58139 ||| ||| ||| Sbjct 173319 TGTTCTCCCAC 173309 >seq4 Length=144043 Score = 147 bits (162), Expect = 2e-30 Identities = 335/504 (66%), Gaps = 0/504 (0%) Strand=Plus/Minus Query 23456 TGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACG 23515 ||||| || || ||||| | ||||| || || ||||| || || || || ||||| ||| Sbjct 45838 TGCCATGGTTCTAGGTACAGAGCAAAGGCACCAGGTCTTTTGTTACCACCTTGATCAACG 45779 Query 23516 TAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCT 23575 || | ||| ||||||||| | ||||| | ||| || | | ||| ||||| | || Sbjct 45778 TATCTGGCAGTGTTGTTGAAAACTCTAACCATAGGTATCAAACCATTGGAAGTACCATTG 45719 Query 23576 ACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCG 23635 || || | || || | | || | |||||||| ||| ||||| || || ||| Sbjct 45718 GTACCAGCAATGTAAGAGCCAGTGGATCTGATGTTGTGAATGTGTAAACCAATACCACCG 45659 Query 23636 CCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCC 23695 | | || || || || |||| || | || || ||||| || || || || Sbjct 45658 GCAGTCTTAGAAATTTGAGCACATTCCTTTAAGGTATCATAGATACCGTCAATAGAATCA 45599 Query 23696 TCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAAC 23755 || || | | | |||||||| ||||||||||| | | | || ||| | || ||| Sbjct 45598 TCCTTCATAGAAATTAAGAAACAAGAAGACATTTGAGGTCTTGGAGTACCAGCATTGAAT 45539 Query 23756 AGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCG 23815 ||||| || || || |||||||||| | ||||| | ||||| || |||||| | Sbjct 45538 AGTGTTGGAGAAGCATGGGTAAAGTATCTTTGAGACATCAAGTTGTAAGTTTCGATGACT 45479 Query 23816 GCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTC 23875 ||||||| || ||||| ||||| | || || | ||| |||| | ||| ||||| Sbjct 45478 TTTTCAATGTTTTCACCGTGGATACCAACAGCAACTCTCATAATCAAATGTTGTGGTCTT 45419 Query 23876 TCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAA 23935 || || | || || || || || | ||||| | || || || || || |||||| Sbjct 45418 TCAACGATCTTACCATTGATCTTCAATAAGTATGATCTTTCCAATGTCTTGAAACCAAAA 45359 Query 23936 TAGTCATAGTTAAAGTCACGATCG 23959 |||| ||||| || || | |||| Sbjct 45358 TAGTTGTAGTTGAAATCTCTATCG 45335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766171544720