Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20uvarum_20[genbank_20GCA_5F000775265.3_202016-04-21] 41 sequences; 8,099,637 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq4 347 1e-90 seq13 255 5e-63 >seq4 Length=144043 Score = 347 bits (384), Expect = 1e-90 Identities = 1215/1877 (65%), Gaps = 61/1877 (3%) Strand=Plus/Minus Query 36796 GTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGC 36855 ||||||| |||| ||| || | || |||||||| || ||||| ||||| || | Sbjct 47191 GTGAATTGAATAGCGGCTGAGGCAGCTTGTGTTCTCAAGTAGTACATACCAGTCTTCAAA 47132 Query 36856 CCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTT---TTGCGTATG--TAGGATTAT 36910 ||| ||||| ||||| || ||||| | |||| || | ||| | || || Sbjct 47131 CCCTTGCTCCAACCGTAGAAGTGCAT----GGAAGTTAACTTACCCATGGTTGGGGCCAT 47076 Query 36911 CTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTT 36970 |||| || |||| || ||| |||||| || || || ||| || || ||||| | Sbjct 47075 G-ATATGAATGTTCATGGAATGAGATTGATCAATGAAAGCTTGTCTATCAGCAGCCATAT 47017 Query 36971 CTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCTG 37030 | | ||| ||||| |||| |||||||| |||||||| | | || || | | | Sbjct 47016 CAATGATAGTCTTTTGTGATAATTCCCAAACAGTTTTATACAAATCCTTCATTTCTTGAG 46957 Query 37031 GTAAATCT---AAATGTTGAATAGAACCATTATGTAACACAATTGTATT---CTTTATGT 37084 | | | | || ||||| ||||||||||| | || || || |||| ||| ||| Sbjct 46956 GAATGTTTGGTAATTGTTGGATAGAACCATTGT-TAGCA--ATGATATTAGACTTCATGG 46900 Query 37085 CATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAA 37144 | | || ||| ||| || | || || |||||| || ||| || |||| || Sbjct 46899 CTTCATCCCAAATACCCATATCAACTAAATCCTTCAATAAGTATGGGTTGACAATTTGGT 46840 Query 37145 AATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCAT 37204 | || |||||||| |||||| | || || || ||| ||||||||| | |||| Sbjct 46839 ATTCACCAGATAAAGTTCTTCTAGAGTACATGTTAGAAGTGAATGGTTCAAAACATTCAT 46780 Query 37205 TATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTC 37264 | | || ||| ||||| || ||||| ||||| ||||| || || | | | | |||| Sbjct 46779 TGTAACCTAAAATTTGGGAAGTAGAAGCAGTTGGCATAGGAGCAACCAATAAGGAGTTTC 46720 Query 37265 TCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGT 37324 | || || || | ||| | || | |||| ||||||||||||| ||||| Sbjct 46719 TTAAACCGTGCTTGGCAATCTTAGCCTTCAATTCAGTCCAATCCCATAAGGTAGTTGGAG 46660 Query 37325 T--CTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGT 37382 | || ||| | ||| ||||||| || ||||| | ||||||||| | | || | Sbjct 46659 CAACGTT--CCAGAAATCGTATTGTAAAACACCTTGAGAAGCTGGAGAACCTTCGTAAGA 46602 Query 37383 CTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATAT 37442 |||| | ||| | ||||| ||||| ||| || ||| | || || | ||| || Sbjct 46601 AGCATAGGTTCCTTCAATTTCAGCTAATTCAGTGGAAGCTTCCAAAGCAGCGTGATAAAT 46542 Query 37443 TGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAA 37502 |||||||||||||| || || ||| || |||| ||| |||||||| | | || Sbjct 46541 GGTTTCGAAAATTTGAATGTTCAATTCCTTGGCTTTTTCAGAATCGAATGGAACTCTTAA 46482 Query 37503 TAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATT 37562 | ||||| |||||||||||| |||||||| | | || ||||| ||| || | || Sbjct 46481 CATCATAAAAGTATCAGCCAAACCTTGAACACCTACGGCAATAGGTCTGTGTCTCATGTT 46422 Query 37563 AGATCT---AGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATT 37619 ||||| || | ||| | | || ||||| || | || || | |||| || Sbjct 46421 GGATCTTCTAGCAGTTTCAA---CAGGGTAATAGTTTCTGTCAATAACAGCGTTTAAGTT 46365 Query 37620 TTTAACTAGTATTTTCGTAATTATTCTCAACTTGTC-GAA--CATAAATACGT-TATTAT 37675 ||| | | | || || | | | || || | ||| ||||| | | | || | Sbjct 46364 CTTAGCAATAACCTTACAAACT-TCGTGAAGTTTTTTGAAGTCATAAGTTTGAGTCTTTT 46306 Query 37676 TAAC-------AAATTTACTCA--------ACGAAATAGATCCTAGATTACATACAGCAA 37720 | | | ||||| | | | || ||| ||| ||||| |||||| Sbjct 46305 GATCTTCGGAGACCTTTACAAAGGCTGGTAAGGCAACAGAAGCTAAGTTACAAACAGCAG 46246 Query 37721 CTTCATCTTCGTTACTAA--ATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGT 37778 ||| | || | || | ||| | ||| || ||| | ||| ||| ||||||| Sbjct 46245 TTTCCTTATCAT--CTGAGTATTCAACAATTTCACAACATAAGTTAGAAGATTTAATTGT 46188 Query 37779 TCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGT 37838 ||||| || ||||||| |||||||||||||||| ||| || || | || | || || Sbjct 46187 ACCCAAGTTCTTTTGATTAGATTTTTTATTACAAGCATCCTTGTAAACAATGAAAGGAGT 46128 Query 37839 TCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAACGATCGC 37898 || ||| |||| || || | || | | |||||| || || || | | || Sbjct 46127 ACCAGTTTCGGTTTGGGCTTCTAAGATGGCGTACCATAACTTTTGAGCCTTGATGGTCTT 46068 Query 37899 TTTAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATA- 37957 | || | | | | |||||||| ||||| || | ||| |||| | ||||| Sbjct 46067 TCTACCTCTACCTTCTAATTCGTATTGGTCATATAGCTTTTCAAAGTCAT--CACCATAA 46010 Query 37958 -CATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCT 38016 |||| | || || ||| ||| | ||| | | || || ||| || ||| | | Sbjct 46009 GCATCACTCAAACCAGGAGCTTCACTAGGAGAGAATAAAGTCCAATCACCATTTGCCTTG 45950 Query 38017 ACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATAT 38076 || | | ||| || || ||||| | |||||| || | ||||||||| | | ||| | Sbjct 45949 ACTCTCTTCATGAACAAGTCAGGAATCCATAAAGCTGGGAATAAATCTCTAGCTCTGATT 45890 Query 38077 TCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGT 38136 ||||| || || ||| ||||| | | | ||||| || ||||||| |||||||||| Sbjct 45889 TCTTCCTTACCGTGATTTTTTCTGATGTCGATGAAATCAAAGATATCAGAGTGCCATGGT 45830 Query 38137 TCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACT 38196 |||| || | | | || || |||||||| | ||| || |||| || ||||| | Sbjct 45829 TCTAGGTACAGAGCAAAGGCACCAGGTCTTTTGTTACCACCTTGATCAACGTATCTGGCA 45770 Query 38197 GTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGAT 38256 ||||| || | | ||| | |||||||| | |||||| || | || || |||| | Sbjct 45769 GTGTTGTTGAAAACTCTAACCATAGGTATCAAACCATTGGAAGTACCATTGGTACCAGCA 45710 Query 38257 ATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTT 38316 || |||| || | | || || || || || || || ||||| ||| || Sbjct 45709 ATGTAAGAGCCAGTGGATCTGATGTTGTGAATGTGTAAACCAATACCACCGGCAGTCTTA 45650 Query 38317 GATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATT 38376 || ||| ||| |||| ||||| |||||| | ||||| || ||| |||||||| || Sbjct 45649 GAAATTTGAGCACATTCCTTTAAGGTATCATAGATACCGTCAATAGAATCATCCTTCATA 45590 Query 38377 GGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGA 38436 | | || |||||| |||||||||||| |||||| || || || |||| ||| ||| Sbjct 45589 GAAATTAAGAAACAAGAAGACATTTGAGGTCTTGGAGTACCAGCATTGAATAGTGTTGGA 45530 Query 38437 GATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATA 38496 || ||||| | || || ||| |||| | || || ||||| || || | || || Sbjct 45529 GAAGCATGGGTAAAGTATCTTTGAGACATCAAGTTGTAAGTTTCGATGACTTTTTCAATG 45470 Query 38497 TCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATT 38556 | | ||||| ||||| | || || ||||| | || ||||||||||||||| | || Sbjct 45469 TTTTCACCGTGGATACCAACAGCAACTCTCATAATCAAATGTTGTGGTCTTTCAACGATC 45410 Query 38557 TTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATA- 38615 ||| ||| || | || || ||| |||| ||||| || | |||||||| | || Sbjct 45409 TTACCATTGATCTTCAATAAGTATGATCTTTCCAATGTCTTGAAACCAAAATAGTTGTAG 45350 Query 38616 -TGAATAATCTCTATCG 38631 |||| |||||||||| Sbjct 45349 TTGAA--ATCTCTATCG 45335 >seq13 Length=415809 Score = 255 bits (282), Expect = 5e-63 Identities = 600/894 (67%), Gaps = 30/894 (3%) Strand=Plus/Plus Query 11338 CTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATA 11397 ||||||||| ||| ||||| ||| || ||||| |||||||| ||| ||||| | Sbjct 173033 CTTTTGATAATCAGAAACTCTCTTTTCAAAGAAATTGGTCTTACCAGCTAAGGATATGTT 173092 Query 11398 CTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAA 11457 ||||||||| || || || |||||||| | ||||| |||||| | ||| Sbjct 173093 TTCCATAAAGTCGAATGGGTTGGTGACATTGAACAGCTTTTCGTTACCTAAGGCAACTAA 173152 Query 11458 TAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAG 11517 ||||||||| || || ||||| | ||| || ||||| | | ||||||||| | | Sbjct 173153 TAATCTATCAGCAACAAATTCAACATATTGGTTCATTAGATCAGCATTCATACCAAGTAA 173212 Query 11518 ATCCACCGGAATAGCAACTGTCAAAAACTC-CTTTTCTATATTAACCGCATCAATGATTA 11576 | || ||||| ||| | |||| || |||||| || | ||| || ||| || | Sbjct 173213 TGCAACTGGAATGGCATCAA-CAAAGTATCTCTTTTCAATTTCAACAGCTTCAGCAATAA 173271 Query 11577 TCGACGTTATAACTTCCTTAGATGGTGGATGTAAT--AAATGTTTAAACATTAAACACGC 11634 | | || | || || ||| | ||| | || || |||| || ||| || Sbjct 173272 TT--CTTTCAATGATCTTTGGATCTGGTTTGTTCTTTAAGTGGGAGAACAATAGACAGGC 173329 Query 11635 AAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGG 11694 ||| ||| |||||||||||| ||||||| || | ||| || || || || || || || Sbjct 173330 AAAGTCAGTATGTAAACCTTCATCTCTACAGATCAATTCGTTGGAGAAAGTCAAACCAGG 173389 Query 11695 CATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCC 11754 |||||| || ||| || | ||| || |||||||||||||||||||| || || | || Sbjct 173390 CATCAAACCCTTTTTCTTCAACCAGAAGATAGCAGCAAATGAACCAGAGAAAAAGACACC 173449 Query 11755 CTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATA------CCTTGTTGCTAGATAT 11808 || ||||| ||||| || || | |||||| || | | |||| | || || || Sbjct 173450 TTCAACAGCAGCAAAAGCAACCAGTCTTTCAGCAAACAAAGCGTCCTTAT--CTTGA-AT 173506 Query 11809 CCATTTTCTGGCCCAATCAGC--TTTCTTT--TTTACGCATTCCATTGTTTCTATAGCGT 11864 |||| | | ||||| ||||| |||| || ||| | | || ||||||||||||| Sbjct 173507 CCATCTAATAGCCCATTCAGCCTTTTCCTTAATTTCAGGA----ATAGTTTCTATAGCGT 173562 Query 11865 TAAATA--AATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATA 11922 | |||| || || ||||| | ||| | | ||||| |||| ||||||| ||| Sbjct 173563 TTAATAAGAAATCA--TTTTCCTTTGGATCCTTGATGTATGTGTCTAATAATAAAGAATA 173620 Query 11923 CATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGA 11982 |||| || ||||| |||||||| ||||| || || |||||||| || |||| Sbjct 173621 AGTTTCAGAGTGAATGTTTTCCATCATAATTTGGAAACCGTAGAAACACTTAGCTTCTGG 173680 Query 11983 ACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGA 12042 | || || || || | || |||| | || || ||||| |||||||||||| || Sbjct 173681 AATTTGAACTTCAGCAGAGAAATTTTCAACCAAGTTTTCATTGACAATACCATCAGAAGC 173740 Query 12043 TGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAAT---TTATC 12099 ||||| || || | | | || || || |||| | || | | | | |||| Sbjct 173741 AGCAAAGAAAGCCAAGACTCTTGAAATGAAAAATCTTTCATTTTCATTCATTCTGTTATT 173800 Query 12100 CCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGA 12159 |||||| | |||||| || || ||||| | ||||||| ||||||| ||| || | | Sbjct 173801 CCAATCGTGTAAATCCTTAGACAAATCGATTTCTTCAGCGGTCCAGAAAGAAGCTTCGGC 173860 Query 12160 TTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213 | ||||| || ||| || || | | ||||| ||||| | |||||| || Sbjct 173861 TCTCTTATAGGCTTCCCAAATTTCTGGGAATTTAATTGGGAATAAAACGAATCT 173914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524559881040