Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20uvarum_20[genbank_20GCA_5F000775265.3_202016-04-21] 41 sequences; 8,099,637 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq13 197 3e-45 seq1 185 2e-41 seq18 136 9e-27 >seq13 Length=415809 Score = 197 bits (218), Expect = 3e-45 Identities = 378/547 (69%), Gaps = 10/547 (2%) Strand=Plus/Minus Query 268754 GCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGG 268813 |||| |||||||| ||||| | |||||| | ||| ||||| | || ||| |||||| Sbjct 173860 GCCGAAGCTTCTTTCTGGACCGCTGAAGAAATCGATTTGTCTAAGGATTTACACGATTGG 173801 Query 268814 AAAAATTTAA--AACCAGAA-GAAAGAAGATTTATATCTTATATTCTTGCGTTT-TTTGC 268869 || || || || | || |||||| || || || | | ||||| ||| ||||| Sbjct 173800 AATAACAGAATGAATGAAAATGAAAGATTTTTCATTTCA-AGAGTCTTGGCTTTCTTTGC 173742 Query 268870 AGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGAT 268929 | | ||||||||| || || ||||| | || || || |||| | || || || || Sbjct 173741 TGCTTCTGATGGTATTGTCAATGAAAACTTGGTTGAAAATTTCTCTGCTGAAGTTCAAAT 173682 Query 268930 TCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGAT 268989 ||| ||||| | ||||| ||||| ||||| || || ||||| ||||| || || | Sbjct 173681 TCCAGAAGCTAAGTGTTTCTACGGTTTCCAAATTATGATGGAAAACATTCACTCTGAAAC 173622 Query 268990 GTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTC 269049 || | ||||| |||| || || || | ||| || ||||| | |||| Sbjct 173621 TTATTCTTTATTATTAGACACATACATCAAGGATCCAAAGGAAAATGATTTCTTATTAAA 173562 Query 269050 TTCTATGAGAACTATGGACTGTG-TGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAA 269108 |||| |||||| ||| | | |||| ||||||||||| | | |||||| Sbjct 173561 CGCTATAGAAACTATTC-CTGAAATTAAGGAAAAGGCTGAATGGGCTATTAGATGGATTC 173503 Query 269109 ACGATAGCG-CGCCTTAC--GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATAT 269165 | |||| | ||| || | ||||| | ||||||||||| ||||| |||||| | | Sbjct 173502 AAGATAAGGACGCTTTGTTTGCTGAAAGACTGGTTGCTTTTGCTGCTGTTGAAGGTGTCT 173443 Query 269166 TCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGAT 269225 | || || || || ||||| |||||||| ||||||||||||| || | ||||| || | Sbjct 173442 TTTTCTCTGGTTCATTTGCTGCTATCTTCTGGTTGAAGAAAAAGGGTTTGATGCCTGGTT 173383 Query 269226 TAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTT 269285 | |||||||| ||||||||||| | || || ||||||||||| ||||| || ||| Sbjct 173382 TGACTTTCTCCAACGAATTGATCTGTAGAGATGAAGGTTTACATACTGACTTTGCCTGTC 173323 Query 269286 TATTATT 269292 |||| || Sbjct 173322 TATTGTT 173316 >seq1 Length=1362551 Score = 185 bits (204), Expect = 2e-41 Identities = 180/232 (78%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | |||| ||||| || |||||||| ||||| || ||||||||| Sbjct 277376 CCACCTCTTAATCTTAAGACTAAGTGTAAAGTGGATTCTTTTTGAATGTTGTAGTCAGAT 277435 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||||||||| ||||||| ||| || ||||| || |||| || ||||||||||| || Sbjct 277436 AAAGTTCTACCATCTTCTAATTGCTTACCAGCGAAGATTAATCTTTGTTGATCAGGTGGA 277495 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || |||||||| || || || || || || ||||| || | | ||| || ||| ||| Sbjct 277496 ATACCTTCTTTGTCTTGGATTTTAGCCTTAACATTGTCGATAGAATCAGAAGATTCGACC 277555 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGT 104564 || | ||||| ||||||||||| || |||||||| || || |||||||||| Sbjct 277556 TCCAAAGTAATGGTCTTACCAGTTAGAGTTTTTACGAAAATTTGCATTTTGT 277607 >seq18 Length=128875 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| | || || |||| |||| ||||||||||| || || || || |||||| Sbjct 91034 CCACCTCTCAATCTTAGAACTAAGTGTAGAGTAGATTCTTTTTGGATGTTGTAATCAGAT 90975 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | |||||||||||||||| |||||| |||||||| |||| || ||||||||||| || Sbjct 90974 AAGGTTCTACCGTCTTCTAATTGTTTACCAGCAAAGATTAATCTTTGTTGATCAGGTGGA 90915 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| || || || ||||| || || ||| || | || || || ||| || Sbjct 90914 ATACCTTCCTTGTCTTGGATCTTGGCCTTGACAGCGTCAATAGTTTCAGCAGATTCGACT 90855 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 || | || || |||||||| || | || || ||||| Sbjct 90854 TCCAAAGTGATGGTCTTACCGGTTAAGGTCTTGACAAA 90817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397795156028