Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20uvarum_20[genbank_20GCA_5F000775265.3_202016-04-21] 41 sequences; 8,099,637 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1 116 3e-21 seq13 96.9 3e-15 seq18 87.8 2e-12 >seq1 Length=1362551 Score = 116 bits (128), Expect = 3e-21 Identities = 167/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 23986 ACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGG 24045 ||||||||||| | || |||||||| ||||||| || | ||||| | || ||||| Sbjct 277607 ACAAAATGCAAATTTTCGTAAAAACTCTAACTGGTAAGACCATTACTTTGGAGGTCGAAT 277548 Query 24046 CCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCG 24105 | || | ||||| | || || || || ||||||||||| || || || | Sbjct 277547 CTTCTGATTCTATCGACAATGTTAAGGCTAAAATCCAAGACAAAGAAGGTATTCCACCTG 277488 Query 24106 ATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GAT 24164 ||||||| ||| | || | || || |||||| | ||||||| |||| | | | | || Sbjct 277487 ATCAACAAAGATTAATCTTCGCTGGTAAGCAATTAGAAGATGGTAGAA-CTTTATCTGAC 277429 Query 24165 TATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||||||||||||||| || | || ||||| |||||||| ||||| || Sbjct 277428 TACAACATTCAAAAAGAATCCACTTTACACTTAGTCTTAAGATTAAGAGGTGG 277376 >seq13 Length=415809 Score = 96.9 bits (106), Expect = 3e-15 Identities = 129/176 (73%), Gaps = 10/176 (6%) Strand=Plus/Plus Query 104879 AATAGAGGCAGGCAAAGTCTGTGTGCAATCCTTCATCTCTAGAAATAAGTTCGTTGCTGT 104938 |||||| ||||||||||| || || || |||||||||||| | || | ||||||| | Sbjct 173319 AATAGA--CAGGCAAAGTCAGTATGTAAACCTTCATCTCTACAGATCAATTCGTTGGAGA 173376 Query 104939 AAGTCAAGCCAGGTA-GAGCCCCtttttttGTGTCTTTAATATAGTAGATGGCAGCAAAA 104997 ||||||| ||||| | | ||||||| |||| || || |||| |||||||| Sbjct 173377 AAGTCAAACCAGGCATCAAACCCTTTT------TCTTCAA-CCAGAAGATAGCAGCAAAT 173429 Query 104998 CTACCGGAGAAAAAGACACCTTCGACGATGGCAAACGCGACCATGCGTTCGGCGAA 105053 ||| ||||||||||||||||| || ||||| || |||| | ||| || || Sbjct 173430 GAACCAGAGAAAAAGACACCTTCAACAGCAGCAAAAGCAACCAGTCTTTCAGCAAA 173485 >seq18 Length=128875 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 24000 TTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATC 24059 ||||| || || ||||| || || | || || | |||||||| | || || || Sbjct 90817 TTTGTCAAGACCTTAACCGGTAAGACCATCACTTTGGAAGTCGAATCTGCTGAAACTATT 90876 Query 24060 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTG 24119 || ||||| ||||| ||||| ||||| || || || |||||||| ||| | Sbjct 90877 GACGCTGTCAAGGCCAAGATCCAAGACAAGGAAGGTATTCCACCTGATCAACAAAGATTA 90936 Query 24120 ATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAA 24179 || | | || || ||| | ||||| | |||| | | ||||| ||||| |||||| Sbjct 90937 ATCTTTGCTGGTAAACAATTAGAAGACGGTAGAACCTTATCTGATTACAACATCCAAAAA 90996 Query 24180 GAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 |||||||| | || ||||| ||||||||||||| || Sbjct 90997 GAATCTACTCTACACTTAGTTCTAAGATTGAGAGGTGG 91034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429935785166355