Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20uvarum_20[genbank_20GCA_5F000775265.3_202016-04-21] 41 sequences; 8,099,637 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1 140 2e-28 seq18 89.7 3e-13 >seq1 Length=1362551 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 308770 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 308711 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 308710 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 308676 Score = 105 bits (116), Expect = 4e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 ||||||||| || | || || || || | |||| || |||||||| ||||| ||||| Sbjct 277375 ACCACCTCTTAATCTTAAGACTAAGTGTAAAGTGGATTCTTTTTGAATGTTGTAGTCAGA 277434 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 ||| | | || |||||||| || || || || |||| | ||||||||| | || Sbjct 277435 TAAAGTTCTACCATCTTCTAATTGCTTACCAGCGAAGATTAATCTTTGTTGATCAGGTGG 277494 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||||||||| ||||| ||| ||||| | || || ||| | ||| || Sbjct 277495 AATACCTTCTTTGTCTTGGATTTTAGCCTTAACATTGTCGATAGAATCAGAAGATTCGAC 277554 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || ||||| || ||||| || | ||||| ||||| || ||||| || Sbjct 277555 CTCCAAAGTAATGGTCTTACCAGTTAGAGTTTTTACGAAAATTTGCATTTT 277605 Score = 89.7 bits (98), Expect = 3e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAA-CTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005 |||||| |||||||||| |||| | |||||| |||| |||||||||||||||||||||| Sbjct 306793 CTCTCTTTTCAAAGTTCCTTTCCATCTTTCCATCACTGTACTTGTTCGCTATCGGTCTCT 306734 Query 20006 CGGTAATATTTAGC 20019 || |||||||||| Sbjct 306733 CGCCAATATTTAGC 306720 >seq18 Length=128875 Score = 89.7 bits (98), Expect = 3e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||||||||| | | || || || ||||| || ||||| || ||||||||||| Sbjct 91035 ACCACCTCTCAATCTTAGAACTAAGTGTAGAGTAGATTCTTTTTGGATGTTGTAATCAGA 90976 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || | |||| ||||||||||| || ||||| |||| | ||||||||| | || Sbjct 90975 TAAGGTTCTACCGTCTTCTAATTGTTTACCAGCAAAGATTAATCTTTGTTGATCAGGTGG 90916 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 | ||||| ||||| || || ||| ||| | | ||| || || ||| || Sbjct 90915 AATACCTTCCTTGTCTTGGATCTTGGCCTTGACAGCGTCAATAGTTTCAGCAGATTCGAC 90856 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAA 38308 ||| || || || || ||||| || ||||| || || || Sbjct 90855 TTCCAAAGTGATGGTCTTACCGGTTAAGGTCTTGACAAA 90817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334947032631071