Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20uvarum_20[genbank_20GCA_5F000775265.3_202016-04-21] 41 sequences; 8,099,637 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq4 381 7e-101 seq13 358 7e-94 >seq4 Length=144043 Score = 381 bits (422), Expect = 7e-101 Identities = 893/1326 (67%), Gaps = 57/1326 (4%) Strand=Plus/Minus Query 47934 ATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTG 47993 |||||| ||||| ||| | |||| || |||||||| || | |||||| || Sbjct 46219 ATTTCACAACATAAGTTAGAAGATTTAATTGTACCCAAGTTCTTTTGATTAGATTTTTTA 46160 Query 47994 TTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATA 48053 ||||| || |||||||||| || ||||| || |||||||| | || | ||| | ||| Sbjct 46159 TTACAAGCATCCTTGTAAACAATGAAAGGAGTACCAGTTTCGGTTTGGGCTTCTAAGATG 46100 Query 48054 GATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTA 48113 | | ||| | | |||||| || |||| || || || |||||||| Sbjct 46099 GCGTACCATAACTTTTGAGCCTTGATGGTCTTTCTACCTCTACCTTCTAATTCGTATTGG 46040 Query 48114 GTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGA 48173 ||||| ||| ||||| ||||| ||||| ||| | || |||||| |||| ||||| Sbjct 46039 TCATATAGCTTTTCAAAGTCATCACCATAAGCATCACTCAAACCAGGAGCTTCACTAGGA 45980 Query 48174 CACATCAATGACCAATCCTCATCATTT---TTTACTCTAGTCATAAATATATCTGGTATC 48230 | | || | |||||| | ||||| || ||||| |||| || | || || ||| Sbjct 45979 GAGAATAAAGTCCAATC---ACCATTTGCCTTGACTCTCTTCATGAACAAGTCAGGAATC 45923 Query 48231 CAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGT 48290 || | |||| |||||||| |||| ||| | |||||| || || ||| || | | Sbjct 45922 CATAAAGCTGGGAATAAATCTCTAGCTCTGATTTCTTCCTTACCGTGATTTTTTCTGATG 45863 Query 48291 TCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGT 48350 || | || || | ||||||| ||||||||||||| || | || | |||| ||| Sbjct 45862 TCGATGAAATCAAAGATATCAGAGTGCCATGGTTCTAGGTACAGAGCAAAGGCACCAGGT 45803 Query 48351 CGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGG 48410 | ||| ||||| |||||||| | ||||||||||| ||||| ||||||| | ||| || Sbjct 45802 CTTTTGTTACCACCTTGATCAACGTATCTGGCAGTGTTGTTGAAAACTCTAACCATAGGT 45743 Query 48411 ACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTA 48470 | | |||||| || |||||||||| || | ||| ||| ||| | | ||| || || Sbjct 45742 ATCAAACCATTGGAAGTACCATTGGTACCAGCAATGTAAGAGCCAGTGGATCTGATGTTG 45683 Query 48471 CTAAT-TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACA-CCGTTTAAGGG 48528 ||| || || ||| |||||||| || | ||||| ||| ||||||| | ||||| || Sbjct 45682 TGAATGTGTAA-ACCAATACCACCGGCAGTCTTAGAAATTTGAGCACATTCCTTTAA-GG 45625 Query 48529 TATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTT 48588 ||||||| || || || ||| |||||| ||||| | || |||||| |||||||| Sbjct 45624 TATCATAGATACCGTCAATAGAATCATCCTTCATAGAAATTAAGAAACAAGAAGACATTT 45565 Query 48589 GCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTG 48648 | || ||| || | ||| |||| ||||||||| ||||| |||| || | | | Sbjct 45564 GAGGTCTTGGAGTACCAGCATTGAATAGTGTTGGAGAAGCATGGGTAAAGTATCTTTGAG 45505 Query 48649 ATAACAATTTATATGTTTCAATAACAGAATCTAT-ATCCCATTGATGTATACCTATAGAT 48707 | | ||| || || ||||| || || || || | || | || ||||| | || Sbjct 45504 ACATCAAGTTGTAAGTTTCGATGACTTTTTCAATGTTTTCACCG-TGGATACCAACAGCA 45446 Query 48708 ACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATAT 48767 || | ||| | || || ||| ||||||||||| || || ||| || ||||| | ||| Sbjct 45445 ACTCTCATAATCAAATGTTGTGGTCTTTCAACGATCTTACCATTGATCTTCAATAAGTAT 45386 Query 48768 GATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCGTTATCATTAATAA 48825 ||| |||||||||| || ||||||||||||||||| ||||| || |||| |||| Sbjct 45385 GATCTTTCCAATGTCTTGAAACCAAAATAGTTGTAGTTGAAA--TCTCTATCGAAGATAA 45328 Query 48826 TTGATGAATTTATTCTTTCCTTATGTTT-ATA----TACT----ACATC--CATTACATT 48874 | | | || || | || || ||||| ||| | | ||||| || | || Sbjct 45327 TAGTAGCATCTAAGGTATCTTTGTGTTTCATAACGGTTTTGTAAACATCATCA-GAAATC 45269 Query 48875 TTTTGATATAA--------TTGATTC---------CTTGTAAAGATCTTCTACAACATCA 48917 || || | || || ||| ||||| | ||||| | ||| | | Sbjct 45268 ATTGGAGACAAAACACCATTTCTTTCGTTAACGTAGTTGTATAAGTCTTCGATAACTTGA 45209 Query 48918 CTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATA 48977 ||||| |||||| |||| || || | ||| || | ||||| || || | | | Sbjct 45208 GAAAATAATTTTTTGGTTTGCTTGTGTAAGTTACTGATGGCGATTCTGGCGGCAAGAACA 45149 Query 48978 GCATAATCTGGATGAATTGTTGTACATGTA-CTAGATATTTCTGCTGCTAATATATCTAA 49036 |||||||| ||||||| || || |||||| | | |||| || ||||| ||||||| Sbjct 45148 GCATAATCAGGATGAACAGTGGT-CATGTAGGCACAAGTTTCAGCGGCTAAGTTATCTAA 45090 Query 49037 TTCTTTAGTAGTTACACCTGTATATATTCCTTGAATAACTTTCATT--GCTATATTTACT 49094 ||| | ||||| |||||| || | || |||| ||| || | || || || Sbjct 45089 TTCGATGGTAGTAACACCTTCGTAGACACCGGAGATAA--TTCTTTGGGTGATTTTGACA 45032 Query 49095 GGATCTATATGATCCATATCCAGTCCATAACATAAtttttttATTCTAGATGTAATTTTA 49154 ||||| ||||| | ||| | |||||| |||||| | ||||| |||||||||||| Sbjct 45031 GGATCGATATGTTTAGCATCTAATCCATAGCATAATCTAGCAATTCTGGATGTAATTTTA 44972 Query 49155 TCAAACATTATATT--CTCTTTACGACCGTCACGTTTTATAACAAACATCTTTACTATAA 49212 |||| ||| | | |||| | ||||| | ||| | ||||||||| |||| || || Sbjct 44971 TCAA--ATTGAACTGGAACTTTTCTTCCGTCTCTTTTAACAACAAACATGTTTA-TA-AA 44916 Query 49213 AAATAT 49218 | |||| Sbjct 44915 AGATAT 44910 Score = 123 bits (136), Expect = 3e-23 Identities = 480/746 (64%), Gaps = 25/746 (3%) Strand=Plus/Minus Query 47009 TTTTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCAT 47068 || ||||| || || |||||||||||||| ||||| ||||| || ||||| ||||| Sbjct 47165 TTGTGTTCTCAAGTAGTACATACCAGTCTTCAAACCCTTGCTCCAACCGTAGAAGTGCAT 47106 Query 47069 ACTAGTTAATTTA-GAATAACTAGGTTC-TGAAATATGAATATTAAGAGATTGACTCTGA 47126 |||||| ||| || | || | || |||||||| || | || ||| ||| Sbjct 47105 GGAAGTTAACTTACCCATGGTTGGGGCCATG--ATATGAATGTTCATGGAATGAGATTGA 47048 Query 47127 TCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCAT 47186 ||||| || || ||||||||| |||||||| | ||| | |||||| || ||||| Sbjct 47047 TCAATGAAAGCTTGTCTATCAGCAGCCATATCAATGATAGTCTTTTGTGATAATTCCCAA 46988 Query 47187 ACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA-GATTAGTA--TTTTGAATAGATCCT 47243 || |||||||| | | || || |||| || | | || ||| | ||| ||||| || Sbjct 46987 ACAGTTTTATACAAATCCTTCATTTCTTGAGGAATGTTTGGTAATTGTTGGATAGAACCA 46928 Query 47244 CCgttttctataatttt---gttttttaattcatttgaccaaagttttcgt-tcagttaa 47299 ||| | || || || || | ||||| || || | | | ||| ||| Sbjct 46927 TTGTTAGCAATGATATTAGACTTCATGGCTTCAT----CCCAAATACCCATATCAACTAA 46872 Query 47300 tgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGAT--AGTAC-TCTACGGCT 47356 || || | | || || |||||||| |||| |||||| ||| | |||| | Sbjct 46871 ATCCTTCAATAAGTATGGGTTGACAATTTGGTATTCACCAGATAAAGTTCTTCTAGAG-- 46814 Query 47357 ATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGA 47416 || || ||| || ||||||| | | ||||||| | || |||||||| | ||| || Sbjct 46813 -TACATGTTAGAAGTGAATGGTTCAAAACATTCATTGTAACCTAAAATTTGGGAAGTAGA 46755 Query 47417 TGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNN 47476 || || ||||| | ||||| |||||| ||||||| || | || |||| Sbjct 46754 AGCAGTTGGCATAGGAGCAACCAATAAGGAGTTTCTTAAACCGTGCTTGGCAATCTTAGC 46695 Query 47477 NNNNNNNNGTTTCCAATCCCA-AAGATCTGATGGAACAACATTCCAAAAATCATATTGAA 47535 |||||||||| ||| | | |||| |||| ||||| ||||| ||||| | Sbjct 46694 CTTCAATTCAGTCCAATCCCATAAGGT-AGTTGGAGCAACGTTCCAGAAATCGTATTGTA 46636 Query 47536 GAATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGA 47595 || |||| | |||||||| | || | ||| | || | | || ||| | Sbjct 46635 AAACACCTTGAGAAGCTGGAGAACCTTCGTAAGAAGCATAGGTTCCTTCAATTTCAGCTA 46576 Query 47596 GTTCACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGAT 47655 |||| |||||||| ||| | ||| || ||||| || |||| ||||| | || Sbjct 46575 ATTCAGTGGAAGCTTCCAAAGCAGCGTGATAAATGGTTTCGAAAATTTGAATGTTCA-AT 46517 Query 47656 TCCTT-GCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCT 47714 ||||| |||| | || || || ||| || ||||| ||||| ||| Sbjct 46516 TCCTTGGCTTTTTCAGAATCGAATGGAACTCTTAACATCATAAAAGTATCAGCCAAACCT 46457 Query 47715 TGAACACCAATACCAATTGGTCTATG 47740 |||||||| | |||| ||||| || Sbjct 46456 TGAACACCTACGGCAATAGGTCTGTG 46431 >seq13 Length=415809 Score = 358 bits (396), Expect = 7e-94 Identities = 631/908 (69%), Gaps = 16/908 (2%) Strand=Plus/Plus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 |||||||| || | |||||| |||||||||||||| || || || |||| ||||| | Sbjct 173034 TTTTGATAATCAGAAACTCTCTTTTCAAAGAAATTGGTCTTACCAGCTAAGGATATGTTT 173093 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 |||||||| || ||||| || | ||||| | | |||| | ||||| | | || | Sbjct 173094 TCCATAAAGTCGAATGGGTTGGTGACATTGAACAGCTTTTCGTTACCTAAGGCAACTAAT 173153 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 | |||||| || ||||||| || |||| |||||| | |||| |||||| || | |||| Sbjct 173154 AATCTATCAGCAACAAATTCAACATATTGGTTCATTAGATCAGCATTCATACCAAGTAAT 173213 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAAT-TCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 ||| || | ||||| || || |||| ||| || | || || || | ||||| Sbjct 173214 GCAACTGGAATGGCATCAACAAAGTATCTCTT-TTCAATTTCAACAGCTTCAGCAATAAT 173272 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTA-TAGAAGATGTTTAAACATCAAACATGCAA 18967 | ||| | | | || || || | ||| || |||| | ||| |||| Sbjct 173273 TCTTTCAATGATCTTTGGATCTGGTTTGTTCTTTAAG-TGGGAGAACAATAGACAGGCAA 173331 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | ||| ||||| || || ||||||| |||||||| || || || || |||||||||| Sbjct 173332 AGTCAGTATGTAAACCTTCATCTCTACAGATCAATTCGTTGGAGAAAGTCAAACCAGGCA 173391 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 ||| || |||| || |||||||| |||| ||||||||| ||||| || || | ||||| Sbjct 173392 TCAAACCCTTTTTCTTCAACCAGAAGATAGCAGCAAATGAACCAGAGAAAAAGACACCTT 173451 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147 | || || ||||||||||| |||||||| || | ||| || |||| ||||||||| Sbjct 173452 CAACAGCAGCAAAAGCAACCAGTCTTTCAGCAAACAAAGCGTCCTTATCTTGAATCCATC 173511 Query 19148 TCAGTGCCCAATCAGCCTT---CTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 | | ||||| |||||||| ||| || || || || || ||||||| || |||| Sbjct 173512 TAATAGCCCATTCAGCCTTTTCCTTAATTTCA---GGAATAGTTTCTATAGCGTTTAATA 173568 Query 19205 GATACAT-ACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCT 19263 | | || | || | || ||| || | |||| |||| |||||| || |||| Sbjct 173569 -AGAAATCATTTTCCTTTGGATCCTTGATGTATGTGTCTAATAATAAAGAATAAGTTTCA 173627 Query 19264 GAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGT 19323 || ||||| ||||| || || || || ||||| ||||| | ||||||| || || Sbjct 173628 GAGTGAATGTTTTCCATCATAATTTGGAAACCGTAGAAACACTTAGCTTCTGGAATTTGA 173687 Query 19324 ACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAA 19383 |||||| | | || |||| ||||| |||||||| || || |||||| ||| ||||| Sbjct 173688 ACTTCAGCAGAGAAATTTTCAACCAAGTTTTCATTGACAATACCATCAGAAGCAGCAAAG 173747 Query 19384 AATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAAT---GTATTCCAATCA 19440 || || || || | ||| ||| | |||||| | | | | |||||||||| Sbjct 173748 AAAGCCAAGACTCTTGAAATGAAAAATCTTTCATTTTCATTCATTCTGTTATTCCAATCG 173807 Query 19441 TTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTA 19500 | | ||| ||||| ||||| | ||||||| | ||||| |||||||| || ||| | ||| Sbjct 173808 TGTAAATCCTTAGACAAATCGATTTCTTCAGCGGTCCAGAAAGAAGCTTCGGCTCTCTTA 173867 Query 19501 TACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCT 19560 || | ||| || || | ||| || || |||| ||| ||||| |||| |||||| Sbjct 173868 TAGGCTTCCCAAATTTCTGGGAATTTAATTGGGAATAAAACGAATCTTCTTTTGTTTTCT 173927 Query 19561 -TTAAGAA 19567 |||| || Sbjct 173928 GTTAATAA 173935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108511919240