Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20uvarum_20[genbank_20GCA_5F000775265.3_202016-04-21] 41 sequences; 8,099,637 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq13 221 2e-52 seq1 143 4e-29 seq18 96.9 5e-15 >seq13 Length=415809 Score = 221 bits (244), Expect = 2e-52 Identities = 550/824 (67%), Gaps = 24/824 (3%) Strand=Plus/Plus Query 17879 ACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATAAAATCAAAT 17938 ||| | || || |||||||| ||||| || | || ||||| | |||||| || ||| Sbjct 173049 ACTCTCTTTTCAAAGAAATTGGTCTTACCAGCTAAGGATATGTTTTCCATAAAGTCGAAT 173108 Query 17939 GGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAATAATCTATCTGCTACA 17998 || || ||| || | ||||| | ||| | |||||||||||| || ||| Sbjct 173109 GGGTTGGTGACATTGAACAGCTTTTCGTTACCTAAGGCAACTAATAATCTATCAGCAACA 173168 Query 17999 AATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAAAGGTAGAGCA 18058 ||||| |||||||| ||| | ||| ||||||||| |||| | | || | ||| Sbjct 173169 AATTCAACATATTGGTTCATTAGATCAGCATTCATACCAAGTAATGCAACTGGAATGGCA 173228 Query 18059 TCAATAATAAAT-TCTTTCTCTATCTCAACAGACTCTTTTATTATGTTT---ATTACCCT 18114 |||| || || ||||| || || ||||||| || || || || || | | | Sbjct 173229 TCAACAAAGTATCTCTTT-TCAATTTCAACAGCTTCAGCAATAATTCTTTCAATGATCTT 173287 Query 18115 AGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGCAAAATCAGTGTG 18174 | | ||| ||| || ||| ||| | | |||| ||| ||||| ||||| || Sbjct 173288 TGGATCTGG---TTTGTTCTTTAAGTGGG---AGAACAATAGACAGGCAAAGTCAGTATG 173341 Query 18175 TAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCt 18234 ||||||||||||||| | || |||||||| || || || || ||||| | ||| | Sbjct 173342 TAAACCTTCATCTCTACAGATCAATTCGTTGGAGAAAGTCAAACCAGGCATCAAACCCTT 173401 Query 18235 tttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAAC-GCACG 18293 ||| || | ||| || || | || || || ||| || || | ||| ||||| ||| | Sbjct 173402 TTTCTTCAACCAGAAGATAGCAGCAAATGAACCAGAGAAAAAGACACCTTCAACAGCA-G 173460 Query 18294 CGAACGCTATTAATCTTTCAGCA---AAACTGTATTTATTGCTCAGTATCCATTTTTGTG 18350 | || || | | |||||||||| ||| || |||| || | |||||| | | Sbjct 173461 CAAAAGCAACCAGTCTTTCAGCAAACAAAGCGTCCTTAT--CT-TGAATCCATCTAATAG 173517 Query 18351 CCCATTC-TCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAATCATCT 18409 ||||||| |||| | || || ||| | |||||||| || || || ||| Sbjct 173518 CCCATTCAGCCTTTTCCTTAATTTCA-GGAATAGTTTCTATAGCGTTTAATAAGAAATCA 173576 Query 18410 TTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATG 18469 ||||| || | ||| || || || ||||| | ||| |||||||| ||||||| || ||| Sbjct 173577 TTTTCCTTTGGATCCTTGATGTATGTGTCTAATAATAAAGAATAAGTTTCAGAGTGAATG 173636 Query 18470 CTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTA 18529 ||||||| || || |||| || || | |||| || ||| ||||| || | Sbjct 173637 TTTTCCATCATAATTTGGAAACCGTAGAAACACTTAGCTTCTGGAATTTGAACTTCAGCA 173696 Query 18530 TAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAA 18589 | || |||| ||||| || ||||| || ||||| |||| || || || || ||||| Sbjct 173697 GAGAAATTTTCAACCAAGTTTTCATTGACAATACCATCAGAAGCAGCAAAGAAAGCCAAG 173756 Query 18590 ACATATTTAATGAAATGTTTTTCATTATCCTTGA---GATTGTTCCATTCATCTATATCT 18646 || | ||||||| | ||||||| || || | || ||||| || | || ||| Sbjct 173757 ACTCTTGAAATGAAAAATCTTTCATTTTCATTCATTCTGTTATTCCAATCGTGTAAATCC 173816 Query 18647 TTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGC 18690 || || | ||| | |||||| | ||||| ||||| | |||||| Sbjct 173817 TTAGACAAATCGATTTCTTCAGCGGTCCAGAAAGAAGCTTCGGC 173860 >seq1 Length=1362551 Score = 143 bits (158), Expect = 4e-29 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| || | ||||| | ||||| || || ||||| || || |||||| | Sbjct 277605 AAAATGCAAATTTTCGTAAAAACTCTAACTGGTAAGACCATTACTTTGGAGGTCGAATCT 277546 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 |||||| ||| || || || |||||| ||||| |||||||| || || || || Sbjct 277545 TCTGATTCTATCGACAATGTTAAGGCTAAAATCCAAGACAAAGAAGGTATTCCACCTGAT 277486 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 ||||||||||| || | || |||||||| | |||||| ||||||||||| || || Sbjct 277485 CAACAAAGATTAATCTTCGCTGGTAAGCAATTAGAAGATGGTAGAACTTTATCTGACTAC 277426 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 || || ||||| | || | || ||||| |||||||||||||| |||| Sbjct 277425 AACATTCAAAAAGAATCCACTTTACACTTAGTCTTAAGATTAAGAGGTGGTG 277374 >seq18 Length=128875 Score = 96.9 bits (106), Expect = 5e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 155832 TTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATT 155891 ||| | || || || || || || || || || || ||||||||| | |||| | |||| Sbjct 90817 TTTGTCAAGACCTTAACCGGTAAGACCATCACTTTGGAAGTCGAATCTGCTGAAACTATT 90876 Query 155892 TTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTG 155951 || || || || ||||| || ||||| || || || || ||||||||||| Sbjct 90877 GACGCTGTCAAGGCCAAGATCCAAGACAAGGAAGGTATTCCACCTGATCAACAAAGATTA 90936 Query 155952 ATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA 156011 || | ||| ||||| || | ||||| ||||| ||||| ||||| || || ||| Sbjct 90937 ATCTTTGCTGGTAAACAATTAGAAGACGGTAGAACCTTATCTGATTACAACATCCAAAAA 90996 Query 156012 GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGT 156052 || | || || || ||||| ||||||| ||||| ||||| Sbjct 90997 GAATCTACTCTACACTTAGTTCTAAGATTGAGAGGTGGTGT 91037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871624915600