Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20uvarum_20[genbank_20GCA_5F000775265.3_202016-04-21] 41 sequences; 8,099,637 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4 232 2e-55 seq13 150 5e-31 seq1 116 1e-20 seq9 89.7 2e-12 seq5 87.8 5e-12 >seq4 Length=144043 Score = 232 bits (256), Expect = 2e-55 Identities = 606/919 (66%), Gaps = 9/919 (1%) Strand=Plus/Minus Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCAC 155646 ||| ||| || | ||||| || ||||| ||||| || || |||||| ||||| |||| Sbjct 46272 CAACAGAAGCTAAGTTACAAACAGCAGTTTCCTTATCATCTGAGTATTCAACAATTTCAC 46213 Query 155647 AGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAG 155706 | || | ||||||| || || || || || ||||| || |||||||| | ||||||| Sbjct 46212 AACATAAGTTAGAAGATTTAATTGTACCCAAGTTCTTTTGATTAGATTTTTTATTACAAG 46153 Query 155707 CATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCC 155766 |||||||||| | |||| | || || || || || | || || || | || || Sbjct 46152 CATCCTTGTAAACAATGAAAGGAGTACCAGTTTCGGTTTGGGCTTCTAAGATGGCGTACC 46093 Query 155767 AGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATT--TCATATA 155824 | | | | || || || ||| | ||| ||||| | || |||| ||||||| Sbjct 46092 ATAACTTTTGAGCCTTGATGGTCTTTCTACCTCTACCTTCTAATTCGTATTGGTCATATA 46033 Query 155825 CAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAA 155884 || || | || ||||| ||| |||||||| ||||| | | || | || Sbjct 46032 --GCTTTTCAAAGTCATCACCATAAGCATCACTCAAACCAGGAGCTTCACTAGGAGAGAA 45975 Query 155885 CAGCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGC 155944 | | |||| ||| | | || | || ||| || | ||| ||| | ||| Sbjct 45974 TAAAGTCCAATCACCATTTGCCTTGACTCTCTTCATGAACAAGTCAGGAATCCATAAAGC 45915 Query 155945 ATAGAAAAGGTCCCTTGCCTTTGACTCCT-CATCGCCGTGATTCTTCCGTAGCTCTAAGA 156003 ||| | || || || | ||| | || | | |||||||| || | | || | || Sbjct 45914 TGGGAATAAATCTCTAGC-TCTGATTTCTTCCTTACCGTGATTTTTTCTGATGTCGATGA 45856 Query 156004 ATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG- 156062 | || ||||||| || ||| || || |||| |||||| |||| || ||| Sbjct 45855 AATCAAAGATATCAGAGTGCCATGGTTCTAGGTACAGAGCAAAGGCACCAGGTCTTTTGT 45796 Query 156063 --CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATAC 156120 ||||| ||||| || || | ||||| || ||||| || | | |||||| || | || Sbjct 45795 TACCACCTTGATCAACGTATCTGGCAGTGTTGTTGAAAACTCTAACCATAGGTATCAAAC 45736 Query 156121 CATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATAT 156180 |||||||||| |||||||| || ||| | || |||| || | | || ||||| | Sbjct 45735 CATTGGAAGTACCATTGGTACCAGCAATGTAAGAGCCAGTGGATCTGATGTTGTGAATGT 45676 Query 156181 GTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAA 156240 ||| ||||||||||| | |||||||||||||| |||||||||| |||| | | Sbjct 45675 GTAAACCAATACCACCGGCAGTCTTAGAAATTTGAGCACATTCCTTTAAGGTATCATAGA 45616 Query 156241 TACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTG 156300 |||| |||||||||||||| | ||| || | || | || ||| | |||||||| || Sbjct 45615 TACCGTCAATAGAATCATCCTTCATAGAAATTAAGAAACAAGAAGACATTTGAGGTCTTG 45556 Query 156301 GTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAAT 156360 | || ||||| ||||||||||| || | ||||| |||| || | | |||||| | | Sbjct 45555 GAGTACCAGCATTGAATAGTGTTGGAGAAGCATGGGTAAAGTATCTTTGAGACATCAAGT 45496 Query 156361 CGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCC 156420 ||| || || | | || |||| || ||||| |||| | || || ||||| Sbjct 45495 TGTAAGTTTCGATGACTTTTTCAATGTTTTCACCGTGGATACCAACAGCAACTCTCATAA 45436 Query 156421 ACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCA 156480 || ||| || || | || || ||| |||| || || | ||||| | ||||| Sbjct 45435 TCAAATGTTGTGGTCTTTCAACGATCTTACCATTGATCTTCAATAAGTATGATCTTTCCA 45376 Query 156481 GAGTTTTAAACCCGAAATA 156499 || || || || ||||| Sbjct 45375 ATGTCTTGAAACCAAAATA 45357 >seq13 Length=415809 Score = 150 bits (166), Expect = 5e-31 Identities = 336/498 (67%), Gaps = 20/498 (4%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| ||||| | | ||| || ||| || |||| ||| ||||| || || | Sbjct 402875 CTATCAAATCTACCCGGTCTAGTCAAAGCTTTATCCAATAAATCAGCTCTATTAGTACCG 402934 Query 288910 GCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTT--AAAATTTGAT 288967 || || ||||||| | || | || || ||||| || || |||||||| | Sbjct 402935 GCTAAAACAACAACATGGTCATCTGATTTGAAACCATC--TAGTTCGACCAAAATTTGGT 402992 Query 288968 TAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttt 289027 | | || ||| ||||||||||| ||| || | | | | | ||| | Sbjct 402993 TTAAAGTGGCTTCTCTTTCATCATTACCACCACTAGCACCTC-----TGGCT-------T 403040 Query 289028 tACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG 289087 |||||| ||||| ||||| ||||||||||| | || || | ||||| ||| || || Sbjct 403041 TACCAATGGCATCGATTTCATCAATGAAAATGATACTTGGGGCATTTTTTCTGGCTGTTT 403100 Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 |||||| |||||||| | ||| || || | ||| ||| |||| || |||||||||| | Sbjct 403101 CAAATAGATCTCTTACTCTGGAAGCACCCATACCTACAAACATCTCAACAAATTCAGCAC 403160 Query 289148 CGGATACTTGAAT-GAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | || || |||| ||||| ||| ||| || || || |||| | |||| ||| ||| Sbjct 403161 CAGAAAC-AGAATAGAATGGCACACCTGCCTCACCGGCAGTTGCCTTGGCCAAAAGAGTC 403219 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGAC 289266 |||||||| || || || || || | | | || | |||| | |||| || Sbjct 403220 TTACCTGTACCTGGAGGACCAGACAAAATAGCACCTCTAGGTAATCTTGCACCTAATTTT 403279 Query 289267 TTATATTTCTCAGGGCTCT-TTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 | |||||| || || ||| | ||||| | |||| |||| || ||| | ||| || || Sbjct 403280 TCATATTT-TCTAGGATCTCTCAAAAAATGAACAAATTCCATAATTTCTTGTTTAGCTTC 403338 Query 289326 ATCACATCCTGCTACATC 289343 ||||||||| || ||||| Sbjct 403339 ATCACATCCAGCAACATC 403356 Score = 114 bits (126), Expect = 4e-20 Identities = 459/705 (65%), Gaps = 22/705 (3%) Strand=Plus/Minus Query 133203 ATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTC 133262 |||||| | ||| ||||| | | || || || |||||||| |||||||||||| Sbjct 173781 ATGAAAGATTTTTCATTTCAAGAGTCTTGGCTTTCTTTGCTGCTTCTGATGGTATTGTCA 173722 Query 133263 TTGAAAATTTAG--GAACACGGTTTATGGGA-GAAGTTCAACTGGCCGAAGCCC-GTGCC 133318 |||||| || | ||| | ||| | | ||||||||| | | ||||| ||| Sbjct 173721 ATGAAAACTTGGTTGAAAA---TTTCTCTGCTGAAGTTCAAATTCCAGAAGCTAAGTGT- 173666 Query 133319 TTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAATT 133378 || || || | || ||| ||||||||| || || ||| || |||||| || | Sbjct 173665 TTCTACGGTTTCCAAATTATGATGGAAAACATTCACTCTGAAACTTATTCTTTATTATTA 173606 Query 133379 GATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATTAGCGAAT-T 133437 || || |||||||| ||| | | || | |||| ||||| || || | | | Sbjct 173605 GACACATACATCAAGGATCCAAAGGAAAATGATTTCTTATTAAACGCTAT-AGAAACTAT 173547 Query 133438 TCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAG 133497 |||| ||||| | || |||| |||||||||| |||||| || || ||| || Sbjct 173546 TCCTGAAATTAAGGAAAAGGCTGAATGGGCTATTAGATGGATTCAAGATAAGGACGCTTT 173487 Query 133498 TTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTT 133557 |||||| | || ||||||||||||| || || || | |||||| |||| | || Sbjct 173486 GTTTGCTGAAAGACTGGTTGCTTTTGCTGCTGTTGAAGGTGTCTTTTTCTCTGGTTCATT 173427 Query 133558 CTGCT-CTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACG 133616 |||| |||| || ||| | || || ||| | | ||||| || ||| || |||| Sbjct 173426 -TGCTGCTATCTTCTGGTTGAAGAAAAAGGGTTTGATGCCTGGTTTGACTTTCTCCAACG 173368 Query 133617 AACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTTACTTCACTCTAAAT 133676 || | || | || || || | | || || || |||||| | || | ||| | | Sbjct 173367 AATTGATCTGTAGAGATGAAGGTTTACATACTGACTTTGCCTGTCTATTGTTCTCCCACT 173308 Query 133677 TAGAGCGACCACTCA-AAAAGAATAAGATTGAAGAAATTATTAGAGAAGCGGTTGAAATT 133735 || || || | || | || | |||||| ||||||| ||||| ||||||||| Sbjct 173307 TAAAG-AACAAACCAGATCCAAAGATCATTGAAAGAATTATTGCTGAAGCTGTTGAAATT 173249 Query 133736 G---AGGTTGAATTTATCAATAGTGCTCTGCC-GTGCCGTTTAATTGGTATGAATGATGT 133791 | || | ||| | | ||| | || || | ||| |||||||||||| || Sbjct 173248 GAAAAGAGATACTTTGT---TGATGCCATTCCAGTTGC-ATTACTTGGTATGAATGCTGA 173193 Query 133792 GCTGATGCAGCGTTATATTGAATTTGTAGCTGACAGATTGGCCGTTCAGTTAGGTGGGGA 133851 || ||| | | ||| |||||||||| ||||| ||||| ||| |||||| || Sbjct 173192 TCTAATGAACCAATATGTTGAATTTGTTGCTGATAGATTATTAGTTGCCTTAGGTAACGA 173133 Query 133852 TAAGATTTACGGTTCCGCCAATCCATTCGACTGGATGGAGAGCAT 133896 ||| | | | | | |||| |||||||||| ||||| | ||| Sbjct 173132 AAAGCTGTTCAATGTCACCAACCCATTCGACTTTATGGAAAACAT 173088 >seq1 Length=1362551 Score = 116 bits (128), Expect = 1e-20 Identities = 248/367 (68%), Gaps = 20/367 (5%) Strand=Plus/Plus Query 380907 AGAACTACTATGGTTTATTAAGGGTGATACATCAAACAGAAGGCTAAAGGCACAGAATG- 380965 |||||| || |||||| ||||||| ||||| |||| || ||| | | |||| | Sbjct 1128358 AGAACTTCTTTGGTTTGTTAAGGGAGATACCAATAACAAAAATCTACAA--AAAGAAGGC 1128415 Query 380966 -TAAAAATCTGGAATGGTAATGGTAGTCGTGAGTTTTTAGATTCCCGTGGTCTAACCAAT 381024 | ||||| ||| ||||||||||| |||||| | ||||||| | ||| |||| | Sbjct 1128416 GTCAAAATTTGGGATGGTAATGGTTCTCGTGAATACCTAGATTCTCTTGGGTTAACTGAC 1128475 Query 381025 AACGAAGAAGATGACCTTGGTCCTATTTACGGATTTCAGTGGAGACATTTTAACGCCGAT 381084 | ||||||| ||| | |||||| |||| || || || |||||||||||| || || Sbjct 1128476 AGAGAAGAAGGTGATTTAGGTCCTGTTTATGGTTTCCAATGGAGACATTTTGGTGCTGAA 1128535 Query 381085 TATGATAATTGTGATAGTGATTATACTGGTAAGGGTGTCGACCAGTTAAAATATATCATA 381144 |||| | ||||| | | ||| || || || || ||| || |||| |||| || Sbjct 1128536 TATGTTGATTGTCACACTGACTACACAAACAAAGGATACGATCAATTAAGCGATATAATT 1128595 Query 381145 GACCAGCTAAA---AAATCCTGAAACAAGAAATTCACGCCGACTAATTATGACTGCGTGG 381201 | || | || |||||| | |||| || | || ||| |||| ||| Sbjct 1128596 CATAAGTTGAAGACCAATCCTTACGATAGAA---------GAATCATCATGTCTGCTTGG 1128646 Query 381202 AATCCTTGCCAGA--TTAATGATATGGCTTTACCACCTTGCCATATTTTATGCCAGTTCA 381259 ||||| ||||| |||| | |||||| | || || ||||| |||| || || ||| Sbjct 1128647 AATCC--ACCAGACTTTAAGAAAATGGCTCTTCCGCCATGCCACGTTTTCTGTCAATTCT 1128704 Query 381260 ATGTTTC 381266 ||||||| Sbjct 1128705 ATGTTTC 1128711 Score = 86.0 bits (94), Expect = 2e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 252530 TATCCATCCTATTATCATAATTTGTAACATACATACCAAGCGCCTGCTTTCCCATAGCAC 252589 ||||||| ||| | ||| || || | | | ||| | || ||||| ||||||||| Sbjct 919742 TATCCATTCTAAAGTTATAGTTAGTCAAGAAAACACCCATGGCTTGCTTACCCATAGCAG 919801 Query 252590 TCTGGTAAGTATTTCTGGGAGACTGATTGTTTTCCGGGAAAGGAATGCATGATGCTACAA 252649 || ||||||||||| ||||| ||||||| || ||||||||||| || || ||| Sbjct 919802 ATTGATAAGTATTTCTAGGAGATTGATTGTGATCTGGGAAAGGAATAATAGAAGCAGCAA 919861 Query 252650 CACCGAAGATAGTGCTTGGGTGAATTTCACAGTGA 252684 |||| || || || || ||||||||||| ||| Sbjct 919862 CACCTAAAATCATGGAAGGATGAATTTCACAATGA 919896 >seq9 Length=197816 Score = 89.7 bits (98), Expect = 2e-12 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 301854 CTTGGACGCAACACCAGCAAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACC 301913 |||||| |||||||| ||||| ||||||||||| | ||| | |||||||| || ||||| Sbjct 139441 CTTGGAGGCAACACCGGCAAAATGGAAAGTATTTAAAGTCATTTGAGTAGCAGGTTCACC 139382 Query 301914 AATACTTTGTGCCGCAATCATACCAACCATTTCTCCTGGTGCTACAATAGACTT 301967 |||| ||| || || | | ||| |||||||| || || |||||||| || Sbjct 139381 AATAGATTGAGCTGCCAAAACACCGACCATTTCACCAGGATGAACAATAGATTT 139328 Score = 86.0 bits (94), Expect = 2e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 302554 TCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTT 302613 |||||| || |||||| ||||||| | ||| | || | | ||||||||||||||| Sbjct 138723 TCATAATGAACCATAATATCTTCCAAAGCCTTAACCAATCTTCTTTGAATATAACCAGTT 138664 Query 302614 GTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAAT 302673 || || || ||||| |||||||| | ||| | | ||||||||| ||||||||||| Sbjct 138663 TCAGCAGTCTTAACAGCAGTATCAATCAAACCTTCTCTACCACCCATGGCATGGAAGAAG 138604 Query 302674 AGCTCTTCCGGTCGTAGCCC 302693 | |||| ||| ||| || Sbjct 138603 AATTCTTGTGGTGTTAGACC 138584 >seq5 Length=248564 Score = 87.8 bits (96), Expect = 5e-12 Identities = 196/292 (67%), Gaps = 7/292 (2%) Strand=Plus/Plus Query 288937 TTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAA 288996 || || |||||||| ||| | |||||| | ||| | ||| ||||||||||| | Sbjct 45035 TTGAACCCATCCATTTCAATTAGTAATTGATTCAATGTATTTTCTCTTTCATCATT---A 45091 Query 288997 CCTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAA 289056 || | ||| || | |||||||| |||| |||||||||||| |||||||| Sbjct 45092 CCATTGGAAATCTTGTTATTATTTCTTTTTTTTCCAATAGCATCAATTTCATCAATGAAG 45151 Query 289057 ATCACACACGGA--GAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTC 289114 || | ||| ||| || | ||| |||| | || || ||||||| ||| || | Sbjct 45152 ATTATACAGGGACTCAAAGT--TCTGGCAAGTTTGAACAAGTCTCTTATACGACTGGCAC 45209 Query 289115 CAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTG 289174 ||| ||| ||| |||| || |||||||| ||| | || | ||| |||| ||| | Sbjct 45210 CAACACCTACAAACATCTCAACAAATTCTGAACCAGAAATGCTAATAAATGGAACACCCG 45269 Query 289175 CTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCC 289226 ||||| | ||| | || | ||| |||||||| || ||||| || || Sbjct 45270 CTTCGTTAGAACATGCTTTAGCTAAAAGAGTCTTACCGGTACCAGGAGGACC 45321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816826835817