Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20uvarum_20[genbank_20GCA_5F000775265.3_202016-04-21] 41 sequences; 8,099,637 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq1 149 8e-31 seq30 93.3 5e-14 >seq1 Length=1362551 Score = 149 bits (164), Expect = 8e-31 Identities = 211/297 (71%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 168581 AGGTGTTAAAGTTTGGAACGATAATGGTTCTCGTGAATTTTTAGATTTATGTGGTTTTAC 168640 ||| || ||| ||||| | | ||||||||||||||||| |||||| ||| || || Sbjct 1128412 AGGCGTCAAAATTTGGGATGGTAATGGTTCTCGTGAATACCTAGATTCTCTTGGGTTAAC 1128471 Query 168641 CGAAAGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGC 168700 || ||| ||||||||||||||||||| ||||||| || |||||||||||| || || Sbjct 1128472 TGACAGAGAAGAAGGTGATTTAGGTCCTGTTTATGGTTTCCAATGGAGACATTTTGGTGC 1128531 Query 168701 TCAATATATTGACTGTGATACAGATTACACCGGACAAGGAGTAGACCAATTAAGTCAAAC 168760 | ||||| |||| ||| | || || ||||| ||||| || |||||||| | | Sbjct 1128532 TGAATATGTTGATTGTCACACTGACTACACAAACAAAGGATACGATCAATTAAGCGATAT 1128591 Query 168761 TATAAATACTTTACACAACAATCCGGAAAATAGAAGAATATTAATTAATAGTTGGGATGT 168820 || ||| || | | |||||| | |||||||||| | || | |||| || Sbjct 1128592 AATTCATAAGTTGAAGACCAATCCTTACGATAGAAGAATCATCATGTCTGCTTGGAATCC 1128651 Query 168821 ACCACAACTTGATAAAATGGTTCTTCCCCCTTGTCACACTTTAGTGCAATTTTATGT 168877 |||| | || | ||||||| |||||| || || ||| ||| ||||| ||||| Sbjct 1128652 ACCAGACTTTAAGAAAATGGCTCTTCCGCCATGCCACGTTTTCTGTCAATTCTATGT 1128708 Score = 96.9 bits (106), Expect = 4e-15 Identities = 166/235 (71%), Gaps = 11/235 (5%) Strand=Plus/Plus Query 51830 AACACTTG-AAGTTGGAGACTTGGTTAAAAGACA-ATTGATGGATGGTGATGATGTACTA 51887 |||| ||| || |||| || | ||| ||||||| || || | |||||||| ||| || Sbjct 1220533 AACAATTGCAAATTGGGGATATTGTTGAAAGACATATAGAAG-ATGGTGATATTGTTTTA 1220591 Query 51888 TTAAATAGGCAACCAACACTTCATAAAGCTTCTATGCAAAGTTTTAAAGTTAAAATTCAA 51947 || ||||| ||||| | | |||| | ||||| | | | | ||||||| | Sbjct 1220592 TTTAATAGACAACCTTCTTTGCATAGACTATCTATCTTATCCCATTATGCTAAAATTAGA 1220651 Query 51948 CCAGTAAAAACATTTA----AAATGAATTTGGCTATGACTAAAGCATATAATGCTGATTT 52003 || | |||||| | ||| |||| || | || || | ||||||| |||||||| Sbjct 1220652 CCTTGGAGAACATTCAGATTAAACGAATGTG--TTTG--TACACCATATAACGCTGATTT 1220707 Query 52004 TGATGGGGATGAAATGAATTTACATGTTCCTCAATCATATGGAGCTACTGCTGAA 52058 |||||| ||||||||||||||||||||||| ||| | | | ||||| |||||| Sbjct 1220708 TGATGGTGATGAAATGAATTTACATGTTCCACAAACTGAAGAAGCTAGAGCTGAA 1220762 Score = 93.3 bits (102), Expect = 5e-14 Identities = 185/268 (69%), Gaps = 7/268 (3%) Strand=Plus/Minus Query 192852 CAATCTGCTCGAAACTGTTTTTATACTTCTATGGTTAAACAAGCCATTGGATTTATTCCG 192911 |||||| || |||| || | | || |||||| ||| |||||||| || || | | Sbjct 919826 CAATCTCCTAGAAATACTTATCAATCTGCTATGGGTAAGCAAGCCATGGGTGTTTTCTTG 919767 Query 192912 TGTCAC---AACTTAAAAACGGAAACAGTATCTCATACATTAAATTATCCACAAAAACCC 192968 | || ||||| | || ||| || | || ||| || | || |||||||| || Sbjct 919766 ACTAACTATAACTTTAGAATGGATACCATGGCTAATATTTTGTACTACCCACAAAAGCCT 919707 Query 192969 CTTGTTACCAC-AGAT-ATTGCAAAATTTAATAAATTAGACGATTATCCAAATGGTATTA 193026 | | ||| || ||| | || || |||| | || | ||| |||| || |||| | Sbjct 919706 TTAGGTACTACCAGAGCAATGGAACATTTGA-AATTCAGA-GATTTACCTGCTGGTCAGA 919649 Query 193027 ATGCTATTGTTGCTATAGCTTGCTATACTGGTTATAATCAAGAAGACAGTATTATTTTAA 193086 |||||||||| ||||| || || ||| |||| |||||||||||||| || ||| | | Sbjct 919648 ATGCTATTGTAGCTATTGCATGTTATTCTGGATATAATCAAGAAGATTCCATGATTATGA 919589 Query 193087 ATAAAGCTTCTATTGAAAGAGGATTATT 193114 || || | |||||||| ||||| ||||| Sbjct 919588 ATCAATCATCTATTGATAGAGGTTTATT 919561 >seq30 Length=396840 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/225 (71%), Gaps = 8/225 (4%) Strand=Plus/Minus Query 193827 AAACATATGGTTAAGGATAAAATGCATGCTAG---AAGTCATGGACAAGTGACTACTTTA 193883 |||||||||||| |||||| |||||||| || ||| | | |||| | || ||| Sbjct 329711 AAACATATGGTTTTGGATAAGATGCATGCAAGAGCAAG--AGGTCCAAGAG-CTGTCTTA 329655 Query 193884 CATCGACAACCAAATTGTGGTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAG 193943 | ||||||| | ||| | ||| || ||| ||||| ||||| || |||||||| Sbjct 329654 ACTAGACAACCTACGGAAGGTAGATCTAGAGATGGTGGTTTGAGATTAGGTGAAATGGAA 329595 Query 193944 AAAGACTGTATTTTAGTTCATGGTGCTACTCAATT-CTTGAATGAAAGAATGTTTTTGTA 194002 | ||| ||| || | | | |||||||| ||||||| ||| | |||||| || | | | Sbjct 329594 AGAGATTGTGTTATTGCTTATGGTGCTTCTCAATTACTTTTA-GAAAGATTGATGATTTC 329536 Query 194003 TTCTGATCCTTTTCAAGTCGATGTTTGCACAGAATGTGGTATGAT 194047 |||||| | ||| |||| ||| ||| | |||||||| |||| Sbjct 329535 ATCTGATGCCTTTGAAGTTGATACTTGTAACAAATGTGGTTTGAT 329491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635177274471480