Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20uvarum_20[genbank_20GCA_5F000775265.3_202016-04-21] 41 sequences; 8,099,637 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq4 241 3e-58 seq13 179 9e-40 seq12 123 6e-23 seq9 100 7e-16 seq1 91.5 3e-13 >seq4 Length=144043 Score = 241 bits (266), Expect = 3e-58 Identities = 581/870 (67%), Gaps = 21/870 (2%) Strand=Plus/Plus Query 110302 ACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCA 110361 |||||||||||||||| || | ||| | | || ||| | ||||||| ||||| Sbjct 45355 ACTATTTTGGTTTCAAGACATTGGAAAGATCATACTTATTGAAGATCAATGGTAAGATCG 45414 Query 110362 TTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTA 110421 ||||| | || ||||| || || | | ||||| ||||||| || || | | ||| Sbjct 45415 TTGAAAGACCACAACATTTGATTATGAGAGTTGCTGTTGGTATCCACGGTGAAAACATTG 45474 Query 110422 AAGCTGTTATTGAATGTTA-----TGATGTATTAAGTAAAAAGAAAGCT-ATTCATGCTA 110475 || || || ||| ||| |||||| | || ||| | | | |||||| Sbjct 45475 AAAAAGTCATCGAAACTTACAACTTGATGTCTCAA------AGATACTTTACCCATGCTT 45528 Query 110476 CTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTC-TA 110534 |||| || ||||| || || || ||| || ||| || ||||||| |||||| | Sbjct 45529 CTCCAACACTATTCAATGCTGGTACTCCAAGACCTCAAATGTCTTCTTG-TTTCTTAATT 45587 Query 110535 GGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAA-GAAACTGCTCTTAT 110593 || || |||||||||||||| ||||| |||||| | |||||| ||| ||||| || Sbjct 45588 TCTATGAAGGATGATTCTATTGACGGTATCTATGATAC-CTTAAAGGAATGTGCTCAAAT 45646 Query 110594 TTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAA 110653 |||||| | | || || |||||| | ||| |||| | || | || | || | | Sbjct 45647 TTCTAAGACTGCCGGTGGTATTGGTTTACACATTCACAACATCAGATCCACTGGCTCTTA 45706 Query 110654 TATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGA 110713 || || | || ||| |||| | ||| | | || ||| | ||||| |||||| | Sbjct 45707 CATTGCTGGTACCAATGGTACTTCCAATGGTTTGATACCTATGGTTAGAGTTTTCAACAA 45766 Query 110714 CACTGCAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCT 110770 |||||| | ||| || ||||||||||| || ||| ||| | |||||| | || || Sbjct 45767 CACTGCCAGATACGTTGATCAAGGTGGTAACAAAAGACCTGGTGCCTTTGCTCTGTACCT 45826 Query 110771 CGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGA 110830 ||||| ||||| || ||||| ||||| ||| | || | | |||||||| || || Sbjct 45827 AGAACCATGGCACTCTGATATCTTTGATTTCATCGACATCAGAAAAAATCACGGTAAGGA 45886 Query 110831 AGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACG 110890 |||| ||||| | |||||||| || | |||||| | || || |||||||| | Sbjct 45887 AGAAATCAGAGCTAGAGATTTATTCCCAGCTTTATGGATTCCTGACTTGTTCATGAAGAG 45946 Query 110891 TGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGA 110950 || | | |||||| ||| || | | | |||| | |||||||| | ||| Sbjct 45947 AGTCAAGGCAAATGGTGATTGGACTTTATTCTCTCCTAGTGAAGCTCCTGGTTTGAGTGA 46006 Query 110951 TGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCG 111010 || ||||| | || |||||| | || || || |||| ||| |||||| | | | Sbjct 46007 TGCTTATGGTGATGACTTTGAAAAGCTATATGACCAATACGAATTAGAAGGTAGAGGTAG 46066 Query 111011 CAAACAAATTCCA-GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTG 111069 ||| | || | |||||| | | |||| | ||| | ||| | ||| ||||||| Sbjct 46067 -AAAGACCATCAAGGCTCAAAAGTTATGGTACGCCATCTTAGAAGCCCAAACCGAAACTG 46125 Query 111070 GAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAG 111129 | ||||||| ||| | || || ||| | |||| ||||||||||||| ||| || | Sbjct 46126 GTACTCCTTTCATTGTTTACAAGGATGCTTGTAATAAAAAATCTAATCAAAAGAACTTGG 46185 Query 111130 GAACAATTAAGTCTAGTAATTTGTGCTGTG 111159 | |||||||| ||| ||| || || |||| Sbjct 46186 GTACAATTAAATCTTCTAACTTATGTTGTG 46215 >seq13 Length=415809 Score = 179 bits (198), Expect = 9e-40 Identities = 486/731 (66%), Gaps = 31/731 (4%) Strand=Plus/Minus Query 131468 TATAAGAAATCTGTTGCGGCCTTCTGGACTGTTGAAGAGATCGATATGACCAAAGATATT 131527 ||||||| | | | || | |||||||| | |||||| |||||| || | || ||| | Sbjct 173869 TATAAGAGAGCCGAAGCTTCTTTCTGGACCGCTGAAGAAATCGATTTGTCTAAGGATTTA 173810 Query 131528 GATGATTGGGAAAAATTAACCTTGAATGAAAA----AGATTTTG--TTTCCAAAGTTCTT 131581 | |||||| | || || |||||||||| ||||||| |||| | ||| | Sbjct 173809 CACGATTGGAATAACAGAA---TGAATGAAAATGAAAGATTTTTCATTTCAAGAGTCTTG 173753 Query 131582 GCATTCTTCGCCGGAAGTGATGGCATTGTTATTGAAAATCTTGTTATTAATTTCATTCAA 131641 || ||||| || | |||||| ||||| | |||||| | ||| |||||| | Sbjct 173752 GCTTTCTTTGCTGCTTCTGATGGTATTGTCAATGAAAACTTGGTTGAAAATTTCTCTGCT 173693 Query 131642 GAAATTGATATTCCTGAAGTAACATCGTTCTACACATTTCAAGCCGCTGTTGAATCTATT 131701 ||| || | ||||| |||| | | |||||| || ||| | ||| ||| Sbjct 173692 GAAGTTCAAATTCCAGAAGCTAAGTGTTTCTACGGTTTCCAAATTATGATGGAAAACATT 173633 Query 131702 CATAGCGAGATGTATTCATTATTGATTGAGAGTCTTG--TTAAAAATGAAGATGATAAAA 131759 || || | ||||| ||||| ||| ||| | | | || || | | || || Sbjct 173632 CACTCTGAAACTTATTCTTTATT-ATT-AGACACATACATCAAGGATCCAAAGGAAAATG 173575 Query 131760 ATAAATTATTTGATGCTGTAAATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTA 131819 || ||||| | ||| || | | |||||| |||||| | || || |||||||||| Sbjct 173574 ATTTCTTATTAAACGCTATAGAAACTATTCCTGAAATTAAGGAAAAGGCTGAATGGGCTA 173515 Query 131820 TTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGACTTGTAGCTTTTGCTTGTG 131879 ||| ||||||||||||| | |||| ||| || |||||| || ||||||||| || Sbjct 173514 TTAGATGGATTCAAGATAAGGACGCTTTGTTTGCTGAAAGACTGGTTGCTTTTGCTGCTG 173455 Query 131880 TTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGAT 131939 |||||||| | || || || ||| | || ||||||||| ||| | ||||| || | Sbjct 173454 TTGAAGGTGTCTTTTTCTCTGGTTCATTTGCTGCTATCTTCTGGTTGAAGAAAAAGGGTT 173395 Query 131940 TGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAGCATTGCATACTG 131999 |||||||||| | | || ||||| |||| |||| |||||||||| || ||||||| Sbjct 173394 TGATGCCTGGTTTGACTTTCTCCAACGAATTGATCTGTAGAGATGAAGGTTTACATACTG 173335 Query 132000 AATTTGC---TATATTAATCTATAGAAAATTTGCTGATAAACTTGATGAAAATAATATTA 132056 | ||||| | |||| ||| | || | |||| ||| ||| | ||| Sbjct 173334 ACTTTGCCTGTCTATTGTTCT---CCCACTTAAAGAACAAACCAGATCCAAAGATCATTG 173278 Query 132057 AACAACTTATAAGCGAAGCAGTTGATATCGAGAAG---GAGTTTATTACAGAAGCTTTGC 132113 || | |||| ||||| ||||| || || ||| | ||| || || || | | Sbjct 173277 AAAGAATTATTGCTGAAGCTGTTGAAATTGAAAAGAGATACTTTGTT---GATGCCATTC 173221 Query 132114 C--TTGCAATTTGATTGGGATGAATGCTGACTCT-ATGAAGGAGTACATTGAATTCGTTG 132170 | ||||| || |||| ||||||||||| ||| ||||| | || ||||||| |||| Sbjct 173220 CAGTTGCA--TTACTTGGTATGAATGCTGA-TCTAATGAACCAATATGTTGAATTTGTTG 173164 Query 132171 CTGATCGTTTA 132181 ||||| | ||| Sbjct 173163 CTGATAGATTA 173153 >seq12 Length=970600 Score = 123 bits (136), Expect = 6e-23 Identities = 207/303 (68%), Gaps = 3/303 (1%) Strand=Plus/Minus Query 167627 CATAGTGTCAAAAACATCGATGAAACTTTTCCAGATTTTTATCGAACCACGTCGTTTGCA 167686 ||| || | |||| ||| |||||| |||||| || ||| || ||||| ||| || Sbjct 519849 CATGGTATTAAAAGTATCAATGAAATATTTCCAAGTTCTTACATTACAACGTCTTTTACA 519790 Query 167687 TTCATCGTAAAAACCATAGTCTCTTGAGATATCAGCACATTCGTGATTTCCTCTTAATAA 167746 ||||| ||||| ||||| |||| | || | |||||||||||||| ||||||||||| Sbjct 519789 CTCATCATAAAATCCATATACTCTAGTGACACTGGCACATTCGTGATTACCTCTTAATAA 519730 Query 167747 AATTATGTTATTTNNNNNNNNNNNNNTGTAGCAAAATAATAACAAAATTGTTTCTAATGA 167806 || | ||| | | ||||||| || || | ||| |||||||| || || Sbjct 519729 AAAGAAGTTTTCTGGATACTTGATCTTGTAGCATAACAAAAGCAATATTGTTTCCAAAGA 519670 Query 167807 TTTAACACCTCTATCAACATAATCACCTAAAAATATATATTTATTTTGGTTTGAAGGATT 167866 || ||||||||| ||||||||||||| |||| | | ||| | | ||| Sbjct 519669 TTGTTTACCTCTATCGACATAATCACCTAGGAATA---AGTAATTGGACGTAGGGGGAAA 519613 Query 167867 ATCTAGTTTTTTAAAAATATTCAATAAATCACTAAATTGACCATGTAAATCACCTACAAC 167926 | | ||||| ||| || | | |||||| ||||| ||||| | |||||| |||| Sbjct 519612 ACCACATTTTTCAAACATTCTGATCAAATCATGGAATTGTCCATGAACATCACCAACAAT 519553 Query 167927 CTT 167929 ||| Sbjct 519552 CTT 519550 >seq9 Length=197816 Score = 100 bits (110), Expect = 7e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 ||||| |||||||| ||||| || || ||||||||||| |||||||| || | ||| || Sbjct 137489 GTTCTTTTCAATAGACAACCTTCTCTACATAAAATGTCCATGATGGCACACAGAGTAAAG 137548 Query 305390 GTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGAT 305449 || | || | || || |||| ||| | || | | | ||||||||||| ||| Sbjct 137549 GTCATGCCTTATTCCACCTTCAGATTGAATCTGTCTGTTACTTCTCCTTATAATGCTGAT 137608 Query 305450 TTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 || ||||| || ||||||||| | ||||| ||||| Sbjct 137609 TTCGATGGTGACGAAATGAATTTACATGTCCCTCA 137643 >seq1 Length=1362551 Score = 91.5 bits (100), Expect = 3e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 305286 AAATTAATGATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGC 305345 ||||| ||||||||| |||||| | | || |||| ||| | || ||||| | Sbjct 1220542 AAATTGGGGATATTGTTGAAAGACATATAGAAGATGGTGATATTGTTTTATTTAATAGAC 1220601 Query 305346 AACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGA 305405 |||| || |||||| | | ||||| | | ||| | | ||| | | || | | Sbjct 1220602 AACCTTCTTTGCATAGACTATCTATCTTATCCCATTATGCTAAAATTAGACCTTGGAGAA 1220661 Query 305406 CATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAA 305465 |||| ||||||| | | ||| |||||| || ||||| || ||||||||||| ||||||| Sbjct 1220662 CATTCAGATTAAACGAATGTGTTTGTACACCATATAACGCTGATTTTGATGGTGATGAAA 1220721 Query 305466 TGAATATGCATGTACCTCAA 305485 ||||| | ||||| || ||| Sbjct 1220722 TGAATTTACATGTTCCACAA 1220741 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812176552401