Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hanseniaspora_20uvarum_20[genbank_20GCA_5F000775265.3_202016-04-21]
41 sequences; 8,099,637 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq4 241 3e-58
seq13 179 9e-40
seq12 123 6e-23
seq9 100 7e-16
seq1 91.5 3e-13
>seq4
Length=144043
Score = 241 bits (266), Expect = 3e-58
Identities = 581/870 (67%), Gaps = 21/870 (2%)
Strand=Plus/Plus
Query 110302 ACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCA 110361
|||||||||||||||| || | ||| | | || ||| | ||||||| |||||
Sbjct 45355 ACTATTTTGGTTTCAAGACATTGGAAAGATCATACTTATTGAAGATCAATGGTAAGATCG 45414
Query 110362 TTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTA 110421
||||| | || ||||| || || | | ||||| ||||||| || || | | |||
Sbjct 45415 TTGAAAGACCACAACATTTGATTATGAGAGTTGCTGTTGGTATCCACGGTGAAAACATTG 45474
Query 110422 AAGCTGTTATTGAATGTTA-----TGATGTATTAAGTAAAAAGAAAGCT-ATTCATGCTA 110475
|| || || ||| ||| |||||| | || ||| | | | ||||||
Sbjct 45475 AAAAAGTCATCGAAACTTACAACTTGATGTCTCAA------AGATACTTTACCCATGCTT 45528
Query 110476 CTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTC-TA 110534
|||| || ||||| || || || ||| || ||| || ||||||| |||||| |
Sbjct 45529 CTCCAACACTATTCAATGCTGGTACTCCAAGACCTCAAATGTCTTCTTG-TTTCTTAATT 45587
Query 110535 GGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAA-GAAACTGCTCTTAT 110593
|| || |||||||||||||| ||||| |||||| | |||||| ||| ||||| ||
Sbjct 45588 TCTATGAAGGATGATTCTATTGACGGTATCTATGATAC-CTTAAAGGAATGTGCTCAAAT 45646
Query 110594 TTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAA 110653
|||||| | | || || |||||| | ||| |||| | || | || | || | |
Sbjct 45647 TTCTAAGACTGCCGGTGGTATTGGTTTACACATTCACAACATCAGATCCACTGGCTCTTA 45706
Query 110654 TATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGA 110713
|| || | || ||| |||| | ||| | | || ||| | ||||| |||||| |
Sbjct 45707 CATTGCTGGTACCAATGGTACTTCCAATGGTTTGATACCTATGGTTAGAGTTTTCAACAA 45766
Query 110714 CACTGCAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCT 110770
|||||| | ||| || ||||||||||| || ||| ||| | |||||| | || ||
Sbjct 45767 CACTGCCAGATACGTTGATCAAGGTGGTAACAAAAGACCTGGTGCCTTTGCTCTGTACCT 45826
Query 110771 CGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGA 110830
||||| ||||| || ||||| ||||| ||| | || | | |||||||| || ||
Sbjct 45827 AGAACCATGGCACTCTGATATCTTTGATTTCATCGACATCAGAAAAAATCACGGTAAGGA 45886
Query 110831 AGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACG 110890
|||| ||||| | |||||||| || | |||||| | || || |||||||| |
Sbjct 45887 AGAAATCAGAGCTAGAGATTTATTCCCAGCTTTATGGATTCCTGACTTGTTCATGAAGAG 45946
Query 110891 TGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGA 110950
|| | | |||||| ||| || | | | |||| | |||||||| | |||
Sbjct 45947 AGTCAAGGCAAATGGTGATTGGACTTTATTCTCTCCTAGTGAAGCTCCTGGTTTGAGTGA 46006
Query 110951 TGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCG 111010
|| ||||| | || |||||| | || || || |||| ||| |||||| | | |
Sbjct 46007 TGCTTATGGTGATGACTTTGAAAAGCTATATGACCAATACGAATTAGAAGGTAGAGGTAG 46066
Query 111011 CAAACAAATTCCA-GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTG 111069
||| | || | |||||| | | |||| | ||| | ||| | ||| |||||||
Sbjct 46067 -AAAGACCATCAAGGCTCAAAAGTTATGGTACGCCATCTTAGAAGCCCAAACCGAAACTG 46125
Query 111070 GAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAG 111129
| ||||||| ||| | || || ||| | |||| ||||||||||||| ||| || |
Sbjct 46126 GTACTCCTTTCATTGTTTACAAGGATGCTTGTAATAAAAAATCTAATCAAAAGAACTTGG 46185
Query 111130 GAACAATTAAGTCTAGTAATTTGTGCTGTG 111159
| |||||||| ||| ||| || || ||||
Sbjct 46186 GTACAATTAAATCTTCTAACTTATGTTGTG 46215
>seq13
Length=415809
Score = 179 bits (198), Expect = 9e-40
Identities = 486/731 (66%), Gaps = 31/731 (4%)
Strand=Plus/Minus
Query 131468 TATAAGAAATCTGTTGCGGCCTTCTGGACTGTTGAAGAGATCGATATGACCAAAGATATT 131527
||||||| | | | || | |||||||| | |||||| |||||| || | || ||| |
Sbjct 173869 TATAAGAGAGCCGAAGCTTCTTTCTGGACCGCTGAAGAAATCGATTTGTCTAAGGATTTA 173810
Query 131528 GATGATTGGGAAAAATTAACCTTGAATGAAAA----AGATTTTG--TTTCCAAAGTTCTT 131581
| |||||| | || || |||||||||| ||||||| |||| | ||| |
Sbjct 173809 CACGATTGGAATAACAGAA---TGAATGAAAATGAAAGATTTTTCATTTCAAGAGTCTTG 173753
Query 131582 GCATTCTTCGCCGGAAGTGATGGCATTGTTATTGAAAATCTTGTTATTAATTTCATTCAA 131641
|| ||||| || | |||||| ||||| | |||||| | ||| |||||| |
Sbjct 173752 GCTTTCTTTGCTGCTTCTGATGGTATTGTCAATGAAAACTTGGTTGAAAATTTCTCTGCT 173693
Query 131642 GAAATTGATATTCCTGAAGTAACATCGTTCTACACATTTCAAGCCGCTGTTGAATCTATT 131701
||| || | ||||| |||| | | |||||| || ||| | ||| |||
Sbjct 173692 GAAGTTCAAATTCCAGAAGCTAAGTGTTTCTACGGTTTCCAAATTATGATGGAAAACATT 173633
Query 131702 CATAGCGAGATGTATTCATTATTGATTGAGAGTCTTG--TTAAAAATGAAGATGATAAAA 131759
|| || | ||||| ||||| ||| ||| | | | || || | | || ||
Sbjct 173632 CACTCTGAAACTTATTCTTTATT-ATT-AGACACATACATCAAGGATCCAAAGGAAAATG 173575
Query 131760 ATAAATTATTTGATGCTGTAAATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTA 131819
|| ||||| | ||| || | | |||||| |||||| | || || ||||||||||
Sbjct 173574 ATTTCTTATTAAACGCTATAGAAACTATTCCTGAAATTAAGGAAAAGGCTGAATGGGCTA 173515
Query 131820 TTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGACTTGTAGCTTTTGCTTGTG 131879
||| ||||||||||||| | |||| ||| || |||||| || ||||||||| ||
Sbjct 173514 TTAGATGGATTCAAGATAAGGACGCTTTGTTTGCTGAAAGACTGGTTGCTTTTGCTGCTG 173455
Query 131880 TTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGAT 131939
|||||||| | || || || ||| | || ||||||||| ||| | ||||| || |
Sbjct 173454 TTGAAGGTGTCTTTTTCTCTGGTTCATTTGCTGCTATCTTCTGGTTGAAGAAAAAGGGTT 173395
Query 131940 TGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAGCATTGCATACTG 131999
|||||||||| | | || ||||| |||| |||| |||||||||| || |||||||
Sbjct 173394 TGATGCCTGGTTTGACTTTCTCCAACGAATTGATCTGTAGAGATGAAGGTTTACATACTG 173335
Query 132000 AATTTGC---TATATTAATCTATAGAAAATTTGCTGATAAACTTGATGAAAATAATATTA 132056
| ||||| | |||| ||| | || | |||| ||| ||| | |||
Sbjct 173334 ACTTTGCCTGTCTATTGTTCT---CCCACTTAAAGAACAAACCAGATCCAAAGATCATTG 173278
Query 132057 AACAACTTATAAGCGAAGCAGTTGATATCGAGAAG---GAGTTTATTACAGAAGCTTTGC 132113
|| | |||| ||||| ||||| || || ||| | ||| || || || | |
Sbjct 173277 AAAGAATTATTGCTGAAGCTGTTGAAATTGAAAAGAGATACTTTGTT---GATGCCATTC 173221
Query 132114 C--TTGCAATTTGATTGGGATGAATGCTGACTCT-ATGAAGGAGTACATTGAATTCGTTG 132170
| ||||| || |||| ||||||||||| ||| ||||| | || ||||||| ||||
Sbjct 173220 CAGTTGCA--TTACTTGGTATGAATGCTGA-TCTAATGAACCAATATGTTGAATTTGTTG 173164
Query 132171 CTGATCGTTTA 132181
||||| | |||
Sbjct 173163 CTGATAGATTA 173153
>seq12
Length=970600
Score = 123 bits (136), Expect = 6e-23
Identities = 207/303 (68%), Gaps = 3/303 (1%)
Strand=Plus/Minus
Query 167627 CATAGTGTCAAAAACATCGATGAAACTTTTCCAGATTTTTATCGAACCACGTCGTTTGCA 167686
||| || | |||| ||| |||||| |||||| || ||| || ||||| ||| ||
Sbjct 519849 CATGGTATTAAAAGTATCAATGAAATATTTCCAAGTTCTTACATTACAACGTCTTTTACA 519790
Query 167687 TTCATCGTAAAAACCATAGTCTCTTGAGATATCAGCACATTCGTGATTTCCTCTTAATAA 167746
||||| ||||| ||||| |||| | || | |||||||||||||| |||||||||||
Sbjct 519789 CTCATCATAAAATCCATATACTCTAGTGACACTGGCACATTCGTGATTACCTCTTAATAA 519730
Query 167747 AATTATGTTATTTNNNNNNNNNNNNNTGTAGCAAAATAATAACAAAATTGTTTCTAATGA 167806
|| | ||| | | ||||||| || || | ||| |||||||| || ||
Sbjct 519729 AAAGAAGTTTTCTGGATACTTGATCTTGTAGCATAACAAAAGCAATATTGTTTCCAAAGA 519670
Query 167807 TTTAACACCTCTATCAACATAATCACCTAAAAATATATATTTATTTTGGTTTGAAGGATT 167866
|| ||||||||| ||||||||||||| |||| | | ||| | | |||
Sbjct 519669 TTGTTTACCTCTATCGACATAATCACCTAGGAATA---AGTAATTGGACGTAGGGGGAAA 519613
Query 167867 ATCTAGTTTTTTAAAAATATTCAATAAATCACTAAATTGACCATGTAAATCACCTACAAC 167926
| | ||||| ||| || | | |||||| ||||| ||||| | |||||| ||||
Sbjct 519612 ACCACATTTTTCAAACATTCTGATCAAATCATGGAATTGTCCATGAACATCACCAACAAT 519553
Query 167927 CTT 167929
|||
Sbjct 519552 CTT 519550
>seq9
Length=197816
Score = 100 bits (110), Expect = 7e-16
Identities = 115/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389
||||| |||||||| ||||| || || ||||||||||| |||||||| || | ||| ||
Sbjct 137489 GTTCTTTTCAATAGACAACCTTCTCTACATAAAATGTCCATGATGGCACACAGAGTAAAG 137548
Query 305390 GTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGAT 305449
|| | || | || || |||| ||| | || | | | ||||||||||| |||
Sbjct 137549 GTCATGCCTTATTCCACCTTCAGATTGAATCTGTCTGTTACTTCTCCTTATAATGCTGAT 137608
Query 305450 TTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484
|| ||||| || ||||||||| | ||||| |||||
Sbjct 137609 TTCGATGGTGACGAAATGAATTTACATGTCCCTCA 137643
>seq1
Length=1362551
Score = 91.5 bits (100), Expect = 3e-13
Identities = 140/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 305286 AAATTAATGATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGC 305345
||||| ||||||||| |||||| | | || |||| ||| | || ||||| |
Sbjct 1220542 AAATTGGGGATATTGTTGAAAGACATATAGAAGATGGTGATATTGTTTTATTTAATAGAC 1220601
Query 305346 AACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGA 305405
|||| || |||||| | | ||||| | | ||| | | ||| | | || | |
Sbjct 1220602 AACCTTCTTTGCATAGACTATCTATCTTATCCCATTATGCTAAAATTAGACCTTGGAGAA 1220661
Query 305406 CATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAA 305465
|||| ||||||| | | ||| |||||| || ||||| || ||||||||||| |||||||
Sbjct 1220662 CATTCAGATTAAACGAATGTGTTTGTACACCATATAACGCTGATTTTGATGGTGATGAAA 1220721
Query 305466 TGAATATGCATGTACCTCAA 305485
||||| | ||||| || |||
Sbjct 1220722 TGAATTTACATGTTCCACAA 1220741
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186812176552401
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |