Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20uvarum_20[genbank_20GCA_5F000775265.3_202016-04-21] 41 sequences; 8,099,637 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq4 315 9e-81 seq13 118 1e-21 >seq4 Length=144043 Score = 315 bits (348), Expect = 9e-81 Identities = 950/1453 (65%), Gaps = 47/1453 (3%) Strand=Plus/Minus Query 110668 GTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGG 110727 ||||||||| | ||||| | | |||||||| ||| ||||| | ||| |||| Sbjct 46853 GTTGACAATTTGGTATTCACCAGATAAAGTTCTTCTAGAGTACATGTTAGAAGTGAATGG 46794 Query 110728 TTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCAT 110787 |||||| |||||||| | ||| || ||||| | || || || |||||||| || || | Sbjct 46793 TTCAAAACATTCATTGTAACCTAAAATTTGGGAAGTAGAAGCAGTTGGCATAGGAGCAAC 46734 Query 110788 CAAAAGACTGTTACGAAGACCCTTCTCCTTGAT----GCGTTCC-TTGAGAACA-TCCCA 110841 ||| | ||| | | ||| | || || || ||| || || || ||||| Sbjct 46733 CAATAAGGAGTTTCTTAAACCGTGCTTGGCAATCTTAGCCTTCAATTCAGTCCAATCCCA 46674 Query 110842 GTCG-TAGTTG-AGCTTGGTTTCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGAC 110899 | |||||| ||| ||| ||| | || | || | || ||||| || Sbjct 46673 TAAGGTAGTTGGAGCAACGTT--------CCAGAAATCGTATTGTAAAACACCTTGAGAA 46622 Query 110900 GCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCC 110959 || |||||||| || | | |||||| |||| |||||| |||||| | || Sbjct 46621 GCTGGAGAACCTTCGTAAGAAGCATAGGTTCCTTCAATTTCAGCTAATTCAGTGGAAGCT 46562 Query 110960 TCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCT 111019 |||| | |||||||| |||||||| || || || |||| |||||||||| || Sbjct 46561 TCCAAAGCAGCGTGATAAATGGTTTCGAAAATTTGAATGTTCAATTCCTTGGCTTTTTCA 46502 Query 111020 GAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCA 111079 ||||| |||| | ||| ||||| ||| || | |||||||||||| | || Sbjct 46501 GAATCGAATGGAACTCTTAACATCATAAAAGTATCAGCCAAACCTTGAACACCTACGGCA 46442 Query 111080 ATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCA 111139 ||||||||||||| ||| || || ||| ||||| ||||| || ||| | ||||||||| Sbjct 46441 ATAGGTCTGTGTCTCATGTTGGATCTTCTAGCAGTTTCAACAGGGTAATAGTTTCTGTCA 46382 Query 111140 ATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATAATCA 111199 || || ||||| || || | || || ||| | ||| |||||||||| | ||| Sbjct 46381 ATAACAGCGTTTAAGTTCTTAGCAATAACCTTACAAACTTCGTGAAGTTTTTTGAAGTCA 46322 Query 111200 AAAGTGCGAGTCTCTTCAT------------TGACATACTTTGGAAGGGCGATTGATGCC 111247 |||| |||||| || || | ||| | ||| | ||| | || || Sbjct 46321 TAAGTTTGAGTCTTTTGATCTTCGGAGACCTTTACAAAGGCTGGTAAGGCAACAGAAGCT 46262 Query 111248 AAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTG 111307 || || |||||||| || || | | ||||| ||| || | |||||| ||||||||| Sbjct 46261 AAGTTACAAACAGCAGTTTCCTTATCATCTGAGTATTCAACAATTTCACAACATAAGTTA 46202 Query 111308 GAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAG 111367 ||| ||||| || ||||| |||||||| ||| || || || || ||||||||||| Sbjct 46201 GAAGATTTAATTGTACCCAAGTTCTTTTGATTAGATTTTTTATTACAAGCATCCTTGTAA 46142 Query 111368 AGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGC 111426 | ||| | || || || || || || || | || | || || | ||| ||| | | Sbjct 46141 ACAATGAAAGGAGTACCAGTTTCGGTTTGGGCTTCTAAGATGGCGTACCATAACTTTTGA 46082 Query 111427 GGCTGGTACAATGGCGT---TGGCCCGTCCCTCCGCCTCGTACTTTGT-GTAGAGGGCTT 111482 | || | |||| | | | | || || ||||| || || || || || Sbjct 46081 GCCTTG----ATGGTCTTTCTACCTCTACCTTCTAATTCGTA-TTGGTCATATAGCTTTT 46027 Query 111483 CAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCT-GGACAGAAAAGAGAC 111541 |||| || ||||| || || | ||| || | ||| || ||| |||| | || | Sbjct 46026 CAAAGTCATCACCATAAGCATCACTCAAACCAGGAG-CTTCACTAGGAGAGAATAAAGTC 45968 Query 111542 CATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAG 111601 || | |||| | ||| || | ||||||||| | ||| |||||||| | | || || Sbjct 45967 CAATCACCATTTGCCTTGACTCTCTTCATGAACAAGTCAGGAATCCATAAAGCTGGGAAT 45908 Query 111602 AGATCTCTA-CACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCAT 111660 | ||||||| | | || ||||| | ||| || || || | || | ||| || | Sbjct 45907 AAATCTCTAGCTCTGA-TTTCTTCCTTACCGTGATTTTTTCTGATGTCGATGAAATCAAA 45849 Query 111661 GATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAG 111716 |||||| | ||||||||| || || || | || | | || |||| | ||| Sbjct 45848 GATATCAGAGTGCCATGGTTCTAGGTACAGAGCAAAGGCACCAGGTCTTTTG-TTACCAC 45790 Query 111717 CTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTG 111776 |||||| || || | || ||| ||| || || | || ||| || || | ||||| | Sbjct 45789 CTTGATCAACGTATCTGGCAGTGTTGTTGAAAACTCTAACCATAGGTATCAAACCATTGG 45730 Query 111777 ATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCC 111836 | |||||| || || ||| ||| | ||| ||| | | || ||||| | | Sbjct 45729 AAGTACCATTGGTACCAGCAATGTAAGAGCCAGTGGATCTGATGTTGTGAATGTGTAAAC 45670 Query 111837 CAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGT 111896 ||||||| || || ||| || ||||| ||||| ||| | | || |||||||||||| Sbjct 45669 CAATACCACCGGCAGTCTTAGAAATTTGAGCACATTCCTTTAAGGTATCATAGATACCGT 45610 Query 111897 TGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTAC 111956 || || || ||||| | | || | ||| ||| ||||| || |||||||| |||| Sbjct 45609 CAATAGAATCATCCTTCATAGAAATTAAGAAACAAGAAGACATTTGAGGTCTTGGAGTAC 45550 Query 111957 CAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGTCGTATG 112016 |||||||||| || ||||| | || || | || | ||| |||||| || ||| | Sbjct 45549 CAGCATTGAATAGTGTTGGAGAAGCATGGGTAAAGTATCTTTGAGACATCAAGTTGTAAG 45490 Query 112017 TCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGT 112076 | || | ||| ||||||| ||| |||||||| || | || || | ||| | || | Sbjct 45489 TTTCGATGACTTTTTCAATGTTTTCACCGTGGATACCAACAGCAACTCTCATAATCAAAT 45430 Query 112077 ACTGTGGGGTTTC 112089 ||||| |||| Sbjct 45429 GTTGTGGTCTTTC 45417 >seq13 Length=415809 Score = 118 bits (130), Expect = 1e-21 Identities = 347/524 (66%), Gaps = 13/524 (2%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 |||||| || || | ||| ||||||| | || | ||| || ||||| | ||| Sbjct 173327 GGCAAAGTCAGTATGTAAACCTTCATCTCTACAGATCAATTCGTTGGAGAAAGTCAAACC 173386 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGC-GCAGAATGACCCGGAGAAGAAGA 122776 ||||| | |||| ||||||||||| | ||||| ||| ||||| || ||||| |||| Sbjct 173387 AGGCATCAAACCCTTTTTCTTCAACCAGAAGATAGCAGCA-AATGAACCAGAGAAAAAGA 173445 Query 122777 TACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAA-GGAGCGAGACTTTGCATCA 122835 ||| || ||| ||||| |||| || | ||| || || |||| ||| | | | Sbjct 173446 CACCTTCAACAGCAGCAAAAGCAACCAGTCTTTCAGCAAACAAAGCG-TCCTTATCTTGA 173504 Query 122836 AACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCA 122895 | |||| | || ||||||| ||||| | || ||| || | ||||| || || | Sbjct 173505 ATCCATCTAATAGCCCATTCAGCCTTTTCCTTAATTTCAGGAATAGTTTCTATAGCGTTT 173564 Query 122896 AATAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTT 122955 ||||| | ||||| | |||||| |||||| |||| | ||| ||||| ||| Sbjct 173565 AATAAGAAATCATTTTCCTTTGGATCCTTGATGTATGTGTCTAATAATAAAGAATAAGTT 173624 Query 122956 TCGCCATGAACCATTT-CATTATGGCATTGATATGCGTAGAATGAGCGCGCTTCGCTTAT 123014 || |||| ||| ||| || ||| | ||||||| | ||||| || Sbjct 173625 TCAGAGTGAATGTTTTCCATCAT-AATTTGGAAACCGTAGAAACACTTAGCTTCTGGAAT 173683 Query 123015 CTGAACCTCATCCGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGC 123074 ||||| ||| | | ||||| | | | || ||| ||||| ||||| || |||| Sbjct 173684 TTGAACTTCAGCAGAGAAATTTTCAACCAAGTTTTCATTGACAATACCATCAGAAGCAGC 173743 Query 123075 AAAGAATGCCAGGATGTACTT--TATGAATTTCTTTTCATTTTCATTCA---GGGTCTTC 123129 |||||| |||| || ||| ||||| ||||||||||||||| | | ||| Sbjct 173744 AAAGAAAGCCAAGA--CTCTTGAAATGAAAAATCTTTCATTTTCATTCATTCTGTTATTC 173801 Query 123130 CAGTCGTCAAGATCTTTGGACAAATCAACTTCTTCCGCAGTCCA 123173 || |||| | ||| || |||||||| | |||||| || ||||| Sbjct 173802 CAATCGTGTAAATCCTTAGACAAATCGATTTCTTCAGCGGTCCA 173845 Score = 89.7 bits (98), Expect = 6e-13 Identities = 166/239 (69%), Gaps = 10/239 (4%) Strand=Plus/Plus Query 11578 TTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCACCG-CATCAA 11636 |||||| |||||||| | ||||| ||||| | | |||| ||| | |||| | Sbjct 403003 TTCTCTTTCATCATTACC------ACCACTAGCACCTC-TGGCTTTACCAATGGCATCGA 403055 Query 11637 TCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAA 11696 | ||||||||||| | |||| ||| ||||| | ||| ||||||| ||||| | | Sbjct 403056 TTTCATCAATGAAAATGATACTTGGGGCATTTTTTCTGGCTGTTTCAAATAGATCTCTTA 403115 Query 11697 CCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGAT-G 11755 | || ||||||| ||| ||||||||||| ||||| | || |||| || | || | Sbjct 403116 CTCTGGAAGCACCCATACCTACAAACATCTCAACAAATTCAGCACCAGA-AACAGAATAG 403174 Query 11756 AATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 ||||| ||| || ||||| || | || ||| | || ||||| || |||||||| Sbjct 403175 AATGGCACACCTGCCTCACCGGCAGTTGCCTTGGCCAAAAGAGTCTTACCTGTACCTGG 403233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031678133600