Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20uvarum_20[genbank_20GCA_5F001747055.1_202016-09-27] 18 sequences; 8,807,786 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1 150 2e-31 seq14 140 3e-28 seq16 86.0 6e-12 >seq1 Length=1289090 Score = 150 bits (166), Expect = 2e-31 Identities = 402/611 (66%), Gaps = 13/611 (2%) Strand=Plus/Plus Query 57537 AGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAA 57596 ||||| || | || || || ||| ||||| |||||| | || || | || ||| Sbjct 687657 AGATTCGTTTTATTCCCAATCAAATTCCCAGAAATTTGGGAAGCCTATAAGAGAGCCGAA 687716 Query 57597 GCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCC 57656 || || || ||||||| |||||| | || ||||||||||| | ||||||| || | Sbjct 687717 GCTTCTTTCTGGACCGCTGAAGAAATCGATTTGTCTAAGGATTTACACGATTGGAATAAC 687776 Query 57657 C---TCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCC 57713 | || ||| ||| ||| ||| ||| | || ||||| || || || || || Sbjct 687777 AGAATGAATGAAAATGAAAGATTTTTCATTTCAAGAGTMTTGGCTTTCTTTGCTGCTTCT 687836 Query 57714 GATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAG 57773 ||||||||||| || || || ||||| |||| || || ||||| ||| | | || Sbjct 687837 GATGGTATTGTCAATGAAAACTTGGTTGAAAAYTTCTCTGCTGAAGTTCAAATTCCAGAA 687896 Query 57774 GCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCG 57833 || | || || ||||| || ||| | || |||||| | || || |||| ||||| Sbjct 687897 GCTAAGTGTTTCTACGGTTTCCAAATTATGATGGAAAACATTCACTCTGAAACTTATTCT 687956 Query 57834 CTACTCATCGATACGTACGTGAAGGA--CAACGACGAGAAACGTAGACTGTTCAACGCGA 57891 || | | || || ||| | ||||| ||| | || || | | || ||||| | Sbjct 687957 TTATTATTAGACACATACATCAAGGATCCAA--AGGAAAATGATTTCTTATTAAACGCTA 688014 Query 57892 TCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCG 57951 | ||||| || || | || | ||||| || ||| | || | |||||| || | Sbjct 688015 TAGAAACTATTCCTGAAATTAAGGAAAAGGCTGAATGGGCTATTAGATGGATTCAA---G 688071 Query 57952 CCACGGCCAC---GTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCT 58008 | || | | ||| || || || || | || || || || || |||||| | || | Sbjct 688072 ATAAGGACGCTTTGTTTGCTGAAAGACTGGTTGCTTTTGCTGCTGTTGAAGGTGTCTTTT 688131 Query 58009 TTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGA 58068 | || || ||||| || || || ||| |||||||| || ||||||| || ||| Sbjct 688132 TCTCTGGTTCATTTGCTGCTATCTTCTGGTTGAAGAAAAAGGGTTTGATGCCTGGTTTGA 688191 Query 58069 CGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAA 58128 | || |||||| ||||| | | || || ||| | |||||||| ||||| || ||| Sbjct 688192 CTTTCTCCAACGAATTGATCTGTAGAGATGAAGGTTTACATACTGACTTTGCCTGTCTAT 688251 Query 58129 TGTACTCTCAC 58139 ||| ||| ||| Sbjct 688252 TGTTCTCYCAC 688262 >seq14 Length=1507144 Score = 140 bits (154), Expect = 3e-28 Identities = 332/503 (66%), Gaps = 0/503 (0%) Strand=Plus/Plus Query 23456 TGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACG 23515 ||||| || || ||||| | ||||| || || ||||| || || || || ||||| || Sbjct 781549 TGCCATGGTTCTAGGTACAGAGCAAAGGCACCAGGTCTTTTGTTACCACCTTGATCAACA 781608 Query 23516 TAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCT 23575 || | ||| ||||||||| | ||||| | ||| || | | ||| ||||| | || Sbjct 781609 TATCTGGCAGTGTTGTTGAAAACTCTAACCATAGGAATCAAACCATTGGAAGTACCATTG 781668 Query 23576 ACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCG 23635 || || | || || | | || | |||||||| ||| ||||| || || || Sbjct 781669 GTACCAGCAATGTAAGAGCCAGTGGATCTGATGTTGTGAATGTGTAAACCAATACCACCK 781728 Query 23636 CCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCC 23695 | | || || || || |||| || | || || ||||| || || || || Sbjct 781729 GCAGTCTTAGAAATTTGAGCACATTCCTTYAAGGTATCATAGATACCGTCAATAGAATCA 781788 Query 23696 TCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAAC 23755 || || | | | |||||||| ||||||||||| | | | || ||| | || ||| Sbjct 781789 TCCTTCATAGAAATTAAGAAACAAGAAGACATTTGAGGTCTTGGAGTACCAGCATTGAAT 781848 Query 23756 AGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCG 23815 ||||| || || || |||||||||| | ||||| | ||||| || |||||| | Sbjct 781849 AGTGTTGGAGAAGCATGGGTAAAGTATCTTTGAGACATCAAGTTGTAAGTTTCGATGACT 781908 Query 23816 GCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTC 23875 ||||||| || ||||| ||||| | || || | ||| |||| | ||| ||||| Sbjct 781909 TTTTCAATGTTTTCACCGTGGATACCAACAGCAACTCTCATRATCAAATGTTGTGGTCTT 781968 Query 23876 TCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAA 23935 || || | || || || || || | ||||| | || || || || || |||||| Sbjct 781969 TCAACGATCTTACCATTGATCTTCAATAAGTATGATCTTTCCAATGTCTTGAAACCAAAA 782028 Query 23936 TAGTCATAGTTAAAGTCACGATC 23958 |||| ||||| || || | ||| Sbjct 782029 TAGTTGTAGTTGAAATCTCTATC 782051 >seq16 Length=726111 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || ||| | || || || || ||||| | || |||||| | Sbjct 202340 ATGCAAATCTTTGTTAAAACTTTAACTGGTAAGACCATCACTTTAGAAGTTGAATCTAGT 202399 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 ||| | |||| | |||||| | ||| || |||||||| | || || || || Sbjct 202400 GACTCTATCGACGCTGTCAAATCTAAAATCCAAGATAAGGAAGGTATTCCTCCTGATCAA 202459 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC-GATTATAA 31371 || | | || ||||| || ||||| || ||||| || || || | | ||||| || Sbjct 202460 CAAAGATTGATTTTCGCCGGTAAACAATTAGAAGATGGTAGAAC-ATTATCTGATTACAA 202518 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||||||||||||| ||||| ||||| || | ||| | || || ||| Sbjct 202519 CATTCAAAAAGAATCCACTCTCCATCTAGTCTTAAGATTAAGAGGTGGT 202567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766299702560