Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20uvarum_20[genbank_20GCA_5F001747055.1_202016-09-27] 18 sequences; 8,807,786 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1 244 9e-60 >seq1 Length=1289090 Score = 244 bits (270), Expect = 9e-60 Identities = 575/850 (68%), Gaps = 31/850 (4%) Strand=Plus/Minus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 |||||||| || |||||| |||||||| || || || || || |||| || || ||| Sbjct 688537 TTTTGATAATCAGAAACTCTCTTTTCAAAGAAATTGGTCTTACCAGCTAAGGATATGTTT 688478 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAAC--AATAGTATTTT-TTACACCCTAATTCTAGT 12976 |||||||| ||||| || || | | || || ||| |||| |||| | | | Sbjct 688477 TCCATAAAGTCGAATGGGTTGGTGACATTGAACAGCTTTTCGTTAC---CTAAGGCAACT 688421 Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036 || ||||| ||||||||||| || | || || ||||||| |||| ||||| || | | Sbjct 688420 AATAATCTATCAGCAACAAATTCAACATATTGGTTCATTAGATCAGCATTCATACCAAGT 688361 Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAAGttt---ttttCTATATCAACTGCTTCGATA 13093 ||| || || || || || | ||||| | ||||| || ||||| ||||| | Sbjct 688360 AATGCAACTGGAATGGCATCA---ACAAAGTATCTCTTTTCAATTTCAACAGCTTCAGCA 688304 Query 13094 ACTATGTCTCTTATTACGTTCTCTAA---TGGAGGATTTGATAGATGCTTAAACATCATA 13150 | || |||| | | ||| | ||| || || || |||| | | Sbjct 688303 ATAAT---TCTTTCAATGATCTTTGGATCTGGCTTGTTCTTTAAGTGRGAGAACAATAGA 688247 Query 13151 CATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGA 13210 || ||||| ||| || || ||||||||||||| || | ||||| || || || | | Sbjct 688246 CAGGCAAAGTCAGTATGTAAACCTTCATCTCTACAGATCAATTCGTTGGAGAAAGTCAAA 688187 Query 13211 CCCGGCAT-AAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaa 13269 || ||||| || |||| || || || ||| || ||||||||||| ||||| || ||||| Sbjct 688186 CCAGGCATCAAACCCTTTTTCTTCAA-CCAGAAGATAGCAGCAAATGAACCAGAGAAAAA 688128 Query 13270 TATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTC 13329 | |||||||| || ||||| || | || |||||| || || | | ||| | Sbjct 688127 GACACCTTCAACAGCAGCAAAAGCAACCAGTCTTTCAGCAAACAAAGCGTCCTTATCTTG 688068 Query 13330 TATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACG-CAGTTCATATTTTCTATTGCGT 13388 ||||| | | ||||| | || |||| |||| ||| ||| ||||||| |||| Sbjct 688067 AATCCATCTAATAGCCCATTCAGCCTTTTCCTTAATTTCAGGA-ATAGTTTCTATAGCGT 688009 Query 13389 TAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACA 13448 | ||||| ||| |||||||| || || || || |||| ||||| ||| Sbjct 688008 TTAATAAGAAATCATTTTCCTTTGGATCCTTGATGTATGTGTCTAATAATAAAGAATAAG 687949 Query 13449 TTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATA 13508 |||| || ||||| ||||||||| ||||||||||| || ||||| |||| |||| | Sbjct 687948 TTTCAGAGTGAATGTTTTCCATCATAATTTGGAAACCGTAGAAACACTTAGCTTCTGGAA 687889 Query 13509 CCTGAACTTC-GGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCA 13567 |||||||| | || || | |||| | |||||||| || || || || ||| |||| Sbjct 687888 TTTGAACTTCAGCAGAGAART-TTTCAACCAAGTTTTCATTGACAATACCATCAGAAGCA 687830 Query 13568 GCaaaaaaaGCAAGTATGTGCTT--AATAAAttttttttCGTTTTCTGACA-ACT-TTA- 13622 ||||| ||||| | | ||| ||| || | |||| ||||| || || ||| Sbjct 687829 GCAAAGAAAGCCA--AKACTCTTGAAATGAAAAATCTTTCATTTTCATTCATTCTGTTAT 687772 Query 13623 ACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAG 13682 |||||| | ||||| || || ||||| | || ||| ||||||| |||||||| | | Sbjct 687771 TCCAATCGTGTAAATCCTTAGACAAATCGATTTCTTCAGCGGTCCAGAAAGAAGCTTCGG 687712 Query 13683 CCTTCTTATA 13692 | ||||||| Sbjct 687711 CTCTCTTATA 687702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430982305453236