Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20uvarum_20[genbank_20GCA_5F001747055.1_202016-09-27] 18 sequences; 8,807,786 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1 196 1e-44 seq18 185 2e-41 seq16 159 8e-34 seq15 136 9e-27 >seq1 Length=1289090 Score = 196 bits (216), Expect = 1e-44 Identities = 377/547 (69%), Gaps = 10/547 (2%) Strand=Plus/Plus Query 268754 GCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGG 268813 |||| |||||||| ||||| | |||||| | ||| ||||| | || ||| |||||| Sbjct 687711 GCCGAAGCTTCTTTCTGGACCGCTGAAGAAATCGATTTGTCTAAGGATTTACACGATTGG 687770 Query 268814 AAAAATTTAA--AACCAGAA-GAAAGAAGATTTATATCTTATATTCTTGCGTTT-TTTGC 268869 || || || || | || |||||| || || || | | | ||| ||| ||||| Sbjct 687771 AATAACAGAATGAATGAAAATGAAAGATTTTTCATTTCA-AGAGTMTTGGCTTTCTTTGC 687829 Query 268870 AGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGAT 268929 | | ||||||||| || || ||||| | || || || |||| | || || || || Sbjct 687830 TGCTTCTGATGGTATTGTCAATGAAAACTTGGTTGAAAAYTTCTCTGCTGAAGTTCAAAT 687889 Query 268930 TCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGAT 268989 ||| ||||| | ||||| ||||| ||||| || || ||||| ||||| || || | Sbjct 687890 TCCAGAAGCTAAGTGTTTCTACGGTTTCCAAATTATGATGGAAAACATTCACTCTGAAAC 687949 Query 268990 GTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTC 269049 || | ||||| |||| || || || | ||| || ||||| | |||| Sbjct 687950 TTATTCTTTATTATTAGACACATACATCAAGGATCCAAAGGAAAATGATTTCTTATTAAA 688009 Query 269050 TTCTATGAGAACTATGGACTGTG-TGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAA 269108 |||| |||||| ||| | | |||| ||||||||||| | | |||||| Sbjct 688010 CGCTATAGAAACTATTC-CTGAAATTAAGGAAAAGGCTGAATGGGCTATTAGATGGATTC 688068 Query 269109 ACGATAGCG-CGCCTTAC--GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATAT 269165 | |||| | ||| || | ||||| | ||||||||||| ||||| |||||| | | Sbjct 688069 AAGATAAGGACGCTTTGTTTGCTGAAAGACTGGTTGCTTTTGCTGCTGTTGAAGGTGTCT 688128 Query 269166 TCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGAT 269225 | || || || || ||||| |||||||| ||||||||||||| || | ||||| || | Sbjct 688129 TTTTCTCTGGTTCATTTGCTGCTATCTTCTGGTTGAAGAAAAAGGGTTTGATGCCTGGTT 688188 Query 269226 TAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTT 269285 | |||||||| ||||||||||| | || || ||||||||||| ||||| || ||| Sbjct 688189 TGACTTTCTCCAACGAATTGATCTGTAGAGATGAAGGTTTACATACTGACTTTGCCTGTC 688248 Query 269286 TATTATT 269292 |||| || Sbjct 688249 TATTGTT 688255 >seq18 Length=436904 Score = 185 bits (204), Expect = 2e-41 Identities = 180/232 (78%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | |||| ||||| || |||||||| ||||| || ||||||||| Sbjct 25614 CCACCTCTTAATCTTAAGACTAAGTGTAAAGTGGATTCTTTTTGAATGTTGTAGTCAGAT 25555 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||||||||| ||||||| ||| || ||||| || |||| || ||||||||||| || Sbjct 25554 AAAGTTCTACCATCTTCTAATTGCTTACCAGCGAAGATTAATCTTTGTTGATCAGGTGGA 25495 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || |||||||| || || || || || || ||||| || | | ||| || ||| ||| Sbjct 25494 ATACCTTCTTTGTCTTGGATTTTAGCCTTAACATTGTCGATAGAATCAGAAGATTCGACC 25435 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGT 104564 || | ||||| ||||||||||| || |||||||| || || |||||||||| Sbjct 25434 TCCAAAGTAATGGTCTTACCAGTTAGAGTTTTTACGAAAATTTGCATTTTGT 25383 >seq16 Length=726111 Score = 159 bits (176), Expect = 8e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | |||||||| | || |||||||| ||||| || || |||||| Sbjct 202566 CCACCTCTTAATCTTAAGACTAGATGGAGAGTGGATTCTTTTTGAATGTTGTAATCAGAT 202507 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | |||||||| ||||||| |||||| || || ||||| | || |||||||||||||| Sbjct 202506 AATGTTCTACCATCTTCTAATTGTTTACCGGCGAAAATCAATCTTTGTTGATCAGGAGGA 202447 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| ||||| || || || | ||| ||| || | | || |||| ||| || Sbjct 202446 ATACCTTCCTTATCTTGGATTTTAGATTTGACAGCGTCGATAGAGTCACTAGATTCAACT 202387 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 |||| || || ||||||||||| | ||||| ||||| || |||||| || Sbjct 202386 TCTAAAGTGATGGTCTTACCAGTTAAAGTTTTAACAAAGATTTGCATTGTG 202336 >seq15 Length=137011 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| | || || |||| |||| ||||||||||| || || || || |||||| Sbjct 38888 CCACCTCTCAATCTTAGAACTAAGTGTAGAGTAGATTCTTTTTGGATGTTGTAATCAGAT 38947 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | |||||||||||||||| |||||| |||||||| |||| || ||||||||||| || Sbjct 38948 AAGGTTCTACCGTCTTCTAATTGTTTACCAGCAAAGATTAATCTTTGTTGATCAGGTGGA 39007 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 || ||||| || || || ||||| || || ||| || | || || || ||| || Sbjct 39008 ATACCTTCCTTGTCTTGGATCTTGGCCTTGACAGCGTCAATAGTTTCAGCAGATTCGACT 39067 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 || | || || |||||||| || | || || ||||| Sbjct 39068 TCCAAAGTGATGGTCTTACCGGTTAAGGTCTTGACAAA 39105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398134458744