Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20uvarum_20[genbank_20GCA_5F001747055.1_202016-09-27] 18 sequences; 8,807,786 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq16 165 7e-36 seq15 145 6e-30 seq18 132 4e-26 >seq16 Length=726111 Score = 165 bits (182), Expect = 7e-36 Identities = 190/256 (74%), Gaps = 5/256 (2%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||||||||||||||| ||||| || ||||| | ||||| ||| | | Sbjct 202340 ATGCAAATCTTTGTTAAAACTTTAACTGGTAAGACCATCACTTTAGAAGTTGAATCTAGT 202399 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || | | |||| | ||||| ||||| ||||| ||||| |||||||| || |||||| Sbjct 202400 GACTCTATCGACGCTGTCAAATCTAAAATCCAAGATAAGGAAGGTATTCCTCCTGATCAA 202459 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || || ||||| ||||| ||||| ||| | || | || ||||||||| Sbjct 202460 CAAAGATTGATTTTCGCCGGTAAACAATTAGAAGATGGTAGAACATTATCTGATTACAAC 202519 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTTCCATTTTAA 22458 ||||||||||||||||| | ||| |||| || |||| | || |||| |||| Sbjct 202520 ATTCAAAAAGAATCCACTCTCCATCTAGTCTTAAGATTAAGAGGTGGTT-----CTTTAT 202574 Query 22459 AATTATATTATATACA 22474 |||| || | |||||| Sbjct 202575 AATTGTAGTKTATACA 202590 >seq15 Length=137011 Score = 145 bits (160), Expect = 6e-30 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 |||||| || || ||||||||||| || ||||| | ||||| ||| | | || || | Sbjct 39106 TTTTGTCAAGACCTTAACCGGTAAGACCATCACTTTGGAAGTCGAATCTGCTGAAACTAT 39047 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 |||| | |||| || || ||||||||||| ||||||||||| ||||||||| | | Sbjct 39046 TGACGCTGTCAAGGCCAAGATCCAAGACAAGGAAGGTATTCCACCTGATCAACAAAGATT 38987 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || ||||| || ||||| ||||| || | ||| | || ||||||||||| ||||| Sbjct 38986 AATCTTTGCTGGTAAACAATTAGAAGACGGTAGAACCTTATCTGATTACAACATCCAAAA 38927 Query 22407 AGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 |||||| || |||| |||||| | ||||| | || ||| || Sbjct 38926 AGAATCTACTCTACACTTAGTTCTAAGATTGAGAGGTGGTGTT 38884 >seq18 Length=436904 Score = 132 bits (146), Expect = 4e-26 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||||||||| || |||||| |||| ||||| || | ||| | || || ||| | Sbjct 25385 AAAATGCAAATTTTCGTAAAAACTCTAACTGGTAAGACCATTACTTTGGAGGTCGAATCT 25444 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||| | | ||| || | || ||||| |||||||| || ||||||||||| ||| Sbjct 25445 TCTGATTCTATCGACAATGTTAAGGCTAAAATCCAAGACAAAGAAGGTATTCCACCTGAT 25504 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 |||||| | | || || || || || || ||||| ||| | || | || || ||| Sbjct 25505 CAACAAAGATTAATCTTCGCTGGTAAGCAATTAGAAGATGGTAGAACTTTATCTGACTAC 25564 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATT 22436 |||||||||||||||||||| |||| ||||| || |||| Sbjct 25565 AACATTCAAAAAGAATCCACTTTACACTTAGTCTTAAGATT 25605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727907922170