Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20uvarum_20[genbank_20GCA_5F001747055.1_202016-09-27] 18 sequences; 8,807,786 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq14 387 2e-102 seq1 360 2e-94 >seq14 Length=1507144 Score = 387 bits (428), Expect = 2e-102 Identities = 890/1325 (67%), Gaps = 55/1325 (4%) Strand=Plus/Plus Query 47934 ATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTG 47993 |||||| ||||| ||| | |||| || |||||||| || | |||||| || Sbjct 781168 ATTTCACAACATAAGTTAGAAGATTTAATTGTACCCAAGTTCTTTTGATTAGATTTTTTA 781227 Query 47994 TTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATA 48053 ||||| || |||||||||| || ||||| || |||||||| | || | ||| | ||| Sbjct 781228 TTACAAGCATCCTTGTAAACAATGAAAGGAGTACCAGTTTCGGTTTGGGCTTCTAAGATG 781287 Query 48054 GATTTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTA 48113 | | ||| | | |||||| || |||| || || || ||||||||| Sbjct 781288 GCGTACCATAACTTTTGAGCCTTGATGGTCTTTCTACCTCTACCTTCTAGTTCGTATTGG 781347 Query 48114 GTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGA 48173 ||| | ||| ||||| ||||| ||||| ||| || |||||| |||| ||||| Sbjct 781348 TCATAWAGCTTTTCAAAGTCATCACCATAAGCATCRCTCAAACCAGGAGCTTCACTAGGA 781407 Query 48174 CACATCAATGACCAATCCTCATCATTT---TTTACTCTAGTCATAAATATATCTGGTATC 48230 | | || | |||||| | ||||| || ||||| |||| || | || || ||| Sbjct 781408 GAGAATAAAGTCCAATC---ACCATTTGCCTTGACTCTCTTCATGAACAAGTCAGGAATC 781464 Query 48231 CAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGT 48290 || | |||| |||||||| |||| ||| | |||||| || || ||| || | | Sbjct 781465 CATAAAGCTGGGAATAAATCTCTAGCTCTGATTTCTTCCTTACCGTGATTTTTTCTGATG 781524 Query 48291 TCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGT 48350 || | || || | ||||||| ||||||||||||| || | || | |||| ||| Sbjct 781525 TCGATGAAATCAAAGATATCAGAGTGCCATGGTTCTAGGTACAGAGCAAAGGCACCAGGT 781584 Query 48351 CGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGG 48410 | ||| ||||| |||||||| | |||||||||||| ||||| ||||||| | ||| || Sbjct 781585 CTTTTGTTACCACCTTGATCAACATATCTGGCAGTGTTGTTGAAAACTCTAACCATAGGA 781644 Query 48411 ACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTA 48470 | | |||||| || |||||||||| || | ||| ||| ||| | | ||| || || Sbjct 781645 ATCAAACCATTGGAAGTACCATTGGTACCAGCAATGTAAGAGCCAGTGGATCTGATGTTG 781704 Query 48471 CTAAT-TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACA-CCGTTTAAGGG 48528 ||| || || ||| |||||||| || | ||||| ||| ||||||| | || || || Sbjct 781705 TGAATGTGTAA-ACCAATACCACCKGCAGTCTTAGAAATTTGAGCACATTCCTTYAA-GG 781762 Query 48529 TATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTT 48588 ||||||| || || || ||| |||||| ||||| | || |||||| |||||||| Sbjct 781763 TATCATAGATACCGTCAATAGAATCATCCTTCATAGAAATTAAGAAACAAGAAGACATTT 781822 Query 48589 GCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTG 48648 | || ||| || | ||| |||| ||||||||| ||||| |||| || | | | Sbjct 781823 GAGGTCTTGGAGTACCAGCATTGAATAGTGTTGGAGAAGCATGGGTAAAGTATCTTTGAG 781882 Query 48649 ATAACAATTTATATGTTTCAATAACAGAATCTAT-ATCCCATTGATGTATACCTATAGAT 48707 | | ||| || || ||||| || || || || | || | || ||||| | || Sbjct 781883 ACATCAAGTTGTAAGTTTCGATGACTTTTTCAATGTTTTCACCG-TGGATACCAACAGCA 781941 Query 48708 ACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATAT 48767 || | ||| | || || ||| ||||||||||| || || ||| || ||||| | ||| Sbjct 781942 ACTCTCATRATCAAATGTTGTGGTCTTTCAACGATCTTACCATTGATCTTCAATAAGTAT 782001 Query 48768 GATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCGTTATCATTAATAA 48825 ||| |||||||||| || ||||||||||||||||| ||||| || |||| |||| Sbjct 782002 GATCTTTCCAATGTCTTGAAACCAAAATAGTTGTAGTTGAAA--TCTCTATCRAAGATAA 782059 Query 48826 TTGATGAATTTATTCTTTCCTTATGTTT-ATA----TACTACATCCAT-----TACATTT 48875 | | | || || | || || ||||| ||| | || | ||| | || Sbjct 782060 TAGTAGCATCTAAGGTATCTTTGTGTTTCATAACGGTTTTATAAACATCATCAGAAATCA 782119 Query 48876 TTTGATATAA--------TTGATTC---------CTTGTAAAGATCTTCTACAACATCAC 48918 || || | || || ||| ||||| | ||||| | ||| | | Sbjct 782120 TTGGAGACAAAACACCATTTCTTTCGTTAACGTAGTTGTATAAGTCTTCGATAACTTGAG 782179 Query 48919 TAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATAG 48978 ||||| |||||| |||| || || | ||| || | ||||| || || | | || Sbjct 782180 AAAATAATTTTTTGGTTTGCTTGTGTAAGTTACTGATGGCAATTCTGGCGGCAAGAACAG 782239 Query 48979 CATAATCTGGATGAATTGTTGTACATGTA-CTAGATATTTCTGCTGCTAATATATCTAAT 49037 ||||||| ||||||| || || |||||| | | |||| || ||||| |||||||| Sbjct 782240 CATAATCAGGATGAACAGTGGT-CATGTAGGCACAAGTTTCAGCGGCTAAGTTATCTAAT 782298 Query 49038 TCTTTAGTAGTTACACCTGTATATATTCCTTGAATAACTTTCATT--GCTATATTTACTG 49095 || | ||||| |||||| || | || |||| ||| || | || || || | Sbjct 782299 TCGATGGTAGTAACACCTTCGTAGACACCGGAGATAA--TTCTTTGGGTGATTTTGACAG 782356 Query 49096 GATCTATATGATCCATATCCAGTCCATAACATAAtttttttATTCTAGATGTAATTTTAT 49155 |||| ||||| | ||| | |||||| |||||| | ||||| ||||||||||||| Sbjct 782357 GATCGATATGTTTAGCATCTAATCCATAGCATAATCTAGCAATTCTGGATGTAATTTTAT 782416 Query 49156 CAAACATTATATT--CTCTTTACGACCGTCACGTTTTATAACAAACATCTTTACTATAAA 49213 ||| ||| | | |||| | ||||| | ||| | ||||||||| |||| || ||| Sbjct 782417 CAA--ATTGAACTGGAACTTTTCTTCCGTCTCTTTTAACAACAAACATGTTTA-TA-AAA 782472 Query 49214 AATAT 49218 |||| Sbjct 782473 GATAT 782477 Score = 114 bits (126), Expect = 1e-20 Identities = 475/745 (64%), Gaps = 23/745 (3%) Strand=Plus/Plus Query 47009 TTTTGTTCGTAAATAATACATACCAGTCTTTAAACCTAAACTCCATCCATAGAAATGCAT 47068 || ||||| || || |||||||||||||| ||||| ||||| || ||||| ||||| Sbjct 780222 TTGTGTTCTCAAGTAGTACATACCAGTCTTCAAACCCTTGCTCCAACCGTAGAAGTGCAT 780281 Query 47069 ACTAGTTAATTTA-GAATAACTAGGTTC-TGAAATATGAATATTAAGAGATTGACTCTGA 47126 |||||| ||| ||| | || | || || ||||| || | || ||| ||| Sbjct 780282 GGAAGTTAACTTACCCATAGTTGGGGCCATG--ATGTGAATGTTCATGGAATGAGATTGA 780339 Query 47127 TCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTCCCAT 47186 ||||| || || ||||||||| |||||||| | ||| | |||||| || ||||| Sbjct 780340 TCAATGAAAGCTTGTCTATCAGCGGCCATATCAATGATAGTCTTTTGTGATAATTCCCAA 780399 Query 47187 ACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA-GATTAGTA--TTTTGAATAGATCCT 47243 || |||||||| | | || || |||| || | | || | | | ||| ||||| || Sbjct 780400 ACAGTTTTATACAAATCCTTCATTTCTTGAGGAATGTTTGGCAATTGTTGGATAGAACCA 780459 Query 47244 CCgttttctataatttt---gttttttaattcatttgaccaaagttttcgt-tcagttaa 47299 ||| | || || || || | ||||| || || | | | ||| ||| Sbjct 780460 TTGTTAGCAATGATATTAGACTTCATGGCTTCAT----CCCAAATACCCATATCAACTAA 780515 Query 47300 tgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGAT--AGTAC-TCTACGGCT 47356 || || | | || || |||||||| |||| |||||| ||| | |||| | Sbjct 780516 ATCCTTCAATAAGTATGGGTTGACAATTTGGTATTCACCAGATAAAGTTCTTCTAGAG-- 780573 Query 47357 ATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGA 47416 || || ||| || ||||||| | | ||||||| | || |||||||| | ||| || Sbjct 780574 -TACATGTTAGAAGTGAATGGTTCGAAACATTCATTGTAACCTAAAATTTGGGAAGTAGA 780632 Query 47417 TGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNN 47476 || || ||||| | ||||| |||||| ||||||| || | || |||| Sbjct 780633 AGCAGTTGGCATAGGAGCAACCAATAAGGAGTTTCTTAAACCGTGCTTGGCAATCTTAGC 780692 Query 47477 NNNNNNNNGTTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAG 47536 |||||||||| | | |||| |||| ||||| ||||| ||||| | Sbjct 780693 CTTCAATTCAGTCCAATCCCATARGGTAGTTGGAGCAACGTTCCAGAAATCGTATTGTAA 780752 Query 47537 AATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAG 47596 || |||| | |||||||| | || | ||| | || | | || ||| | Sbjct 780753 AACACCTTGAGAAGCTGGAGAACCTTCGTAAGAAGCATAGGTTCCTTCAATTTCAGCTAA 780812 Query 47597 TTCACAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATT 47656 |||| |||||||| ||| | ||| || ||||| || |||| ||||| | ||| Sbjct 780813 TTCAGTGGAAGCTTCCAAAGCAGCGTGATAAATGGTTTCGAAAATTTGAATGTTCA-ATT 780871 Query 47657 CCTT-GCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTT 47715 | || |||| | || || || ||| || ||||| ||||| |||| Sbjct 780872 CYTTGGCTTTTTCAGAATCGAATGGAACTCTTAACATCATAAAAGTATCAGCCAAACCTT 780931 Query 47716 GAACACCAATACCAATTGGTCTATG 47740 ||||||| | |||| ||||| || Sbjct 780932 GAACACCTACGGCAATAGGTCTGTG 780956 >seq1 Length=1289090 Score = 360 bits (398), Expect = 2e-94 Identities = 631/908 (69%), Gaps = 16/908 (2%) Strand=Plus/Minus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 |||||||| || | |||||| |||||||||||||| || || || |||| ||||| | Sbjct 688537 TTTTGATAATCAGAAACTCTCTTTTCAAAGAAATTGGTCTTACCAGCTAAGGATATGTTT 688478 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 |||||||| || ||||| || | ||||| | | |||| | ||||| | | || | Sbjct 688477 TCCATAAAGTCGAATGGGTTGGTGACATTGAACAGCTTTTCGTTACCTAAGGCAACTAAT 688418 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 | |||||| || ||||||| || |||| |||||| | |||| |||||| || | |||| Sbjct 688417 AATCTATCAGCAACAAATTCAACATATTGGTTCATTAGATCAGCATTCATACCAAGTAAT 688358 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAAT-TCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 ||| || | ||||| || || |||| ||| || | || || || | ||||| Sbjct 688357 GCAACTGGAATGGCATCAACAAAGTATCTCTT-TTCAATTTCAACAGCTTCAGCAATAAT 688299 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTA-TAGAAGATGTTTAAACATCAAACATGCAA 18967 | ||| | | | || || || | ||| || |||| | ||| |||| Sbjct 688298 TCTTTCAATGATCTTTGGATCTGGCTTGTTCTTTAAG-TGRGAGAACAATAGACAGGCAA 688240 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | ||| ||||| || || ||||||| |||||||| || || || || |||||||||| Sbjct 688239 AGTCAGTATGTAAACCTTCATCTCTACAGATCAATTCGTTGGAGAAAGTCAAACCAGGCA 688180 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 ||| || |||| || |||||||| |||| ||||||||| ||||| || || | ||||| Sbjct 688179 TCAAACCCTTTTTCTTCAACCAGAAGATAGCAGCAAATGAACCAGAGAAAAAGACACCTT 688120 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATT 19147 | || || ||||||||||| |||||||| || | ||| || |||| ||||||||| Sbjct 688119 CAACAGCAGCAAAAGCAACCAGTCTTTCAGCAAACAAAGCGTCCTTATCTTGAATCCATC 688060 Query 19148 TCAGTGCCCAATCAGCCTT---CTTTTTTACACATGGCATTGTCTCTATAGAATTAAATA 19204 | | ||||| |||||||| ||| || || || || || ||||||| || |||| Sbjct 688059 TAATAGCCCATTCAGCCTTTTCCTTAATTTCA---GGAATAGTTTCTATAGCGTTTAATA 688003 Query 19205 GATACAT-ACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCT 19263 | | || | || | || ||| || | |||| |||| |||||| || |||| Sbjct 688002 -AGAAATCATTTTCCTTTGGATCCTTGATGTATGTGTCTAATAATAAAGAATAAGTTTCA 687944 Query 19264 GAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGT 19323 || ||||| ||||| || || || || ||||| ||||| | ||||||| || || Sbjct 687943 GAGTGAATGTTTTCCATCATAATTTGGAAACCGTAGAAACACTTAGCTTCTGGAATTTGA 687884 Query 19324 ACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAA 19383 |||||| | | || |||| ||||| |||||||| || || |||||| ||| ||||| Sbjct 687883 ACTTCAGCAGAGAARTTTTCAACCAAGTTTTCATTGACAATACCATCAGAAGCAGCAAAG 687824 Query 19384 AATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAAT---GTATTCCAATCA 19440 || || || || | ||| ||| | |||||| | | | | |||||||||| Sbjct 687823 AAAGCCAAKACTCTTGAAATGAAAAATCTTTCATTTTCATTCATTCTGTTATTCCAATCG 687764 Query 19441 TTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTA 19500 | | ||| ||||| ||||| | ||||||| | ||||| |||||||| || ||| | ||| Sbjct 687763 TGTAAATCCTTAGACAAATCGATTTCTTCAGCGGTCCAGAAAGAAGCTTCGGCTCTCTTA 687704 Query 19501 TACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCT 19560 || | ||| || || | ||| || || |||| ||| ||||| |||| |||||| Sbjct 687703 TAGGCTTCCCAAATTTCTGGGAATTTGATTGGGAATAAAACGAATCTTCTTTTGTTTTCT 687644 Query 19561 -TTAAGAA 19567 |||| || Sbjct 687643 GTTAATAA 687636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108673525520