Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20uvarum_20[genbank_20GCA_5F001747055.1_202016-09-27] 18 sequences; 8,807,786 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1 223 5e-53 seq16 152 8e-32 seq18 143 4e-29 seq15 96.9 5e-15 >seq1 Length=1289090 Score = 223 bits (246), Expect = 5e-53 Identities = 550/824 (67%), Gaps = 24/824 (3%) Strand=Plus/Minus Query 17879 ACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATAAAATCAAAT 17938 ||| | || || |||||||| ||||| || | || ||||| | |||||| || ||| Sbjct 688522 ACTCTCTTTTCAAAGAAATTGGTCTTACCAGCTAAGGATATGTTTTCCATAAAGTCGAAT 688463 Query 17939 GGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAATAATCTATCTGCTACA 17998 || || ||| || | ||||| | ||| | |||||||||||| || ||| Sbjct 688462 GGGTTGGTGACATTGAACAGCTTTTCGTTACCTAAGGCAACTAATAATCTATCAGCAACA 688403 Query 17999 AATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAAAGGTAGAGCA 18058 ||||| |||||||| ||| | ||| ||||||||| |||| | | || | ||| Sbjct 688402 AATTCAACATATTGGTTCATTAGATCAGCATTCATACCAAGTAATGCAACTGGAATGGCA 688343 Query 18059 TCAATAATAAAT-TCTTTCTCTATCTCAACAGACTCTTTTATTATGTTT---ATTACCCT 18114 |||| || || ||||| || || ||||||| || || || || || | | | Sbjct 688342 TCAACAAAGTATCTCTTT-TCAATTTCAACAGCTTCAGCAATAATTCTTTCAATGATCTT 688284 Query 18115 AGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACACGCAAAATCAGTGTG 18174 | | |||| || || ||| ||| | | |||| ||| ||||| ||||| || Sbjct 688283 TGGATCTGGC---TTGTTCTTTAAGTGRG---AGAACAATAGACAGGCAAAGTCAGTATG 688230 Query 18175 TAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATACCTCt 18234 ||||||||||||||| | || |||||||| || || || || ||||| | ||| | Sbjct 688229 TAAACCTTCATCTCTACAGATCAATTCGTTGGAGAAAGTCAAACCAGGCATCAAACCCTT 688170 Query 18235 tttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAAC-GCACG 18293 ||| || | ||| || || | || || || ||| || || | ||| ||||| ||| | Sbjct 688169 TTTCTTCAACCAGAAGATAGCAGCAAATGAACCAGAGAAAAAGACACCTTCAACAGCA-G 688111 Query 18294 CGAACGCTATTAATCTTTCAGCA---AAACTGTATTTATTGCTCAGTATCCATTTTTGTG 18350 | || || | | |||||||||| ||| || |||| || | |||||| | | Sbjct 688110 CAAAAGCAACCAGTCTTTCAGCAAACAAAGCGTCCTTAT--CT-TGAATCCATCTAATAG 688054 Query 18351 CCCATTC-TCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAAACAAATCATCT 18409 ||||||| |||| | || || ||| | |||||||| || || || ||| Sbjct 688053 CCCATTCAGCCTTTTCCTTAATTTCA-GGAATAGTTTCTATAGCGTTTAATAAGAAATCA 687995 Query 18410 TTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATG 18469 ||||| || | ||| || || || ||||| | ||| |||||||| ||||||| || ||| Sbjct 687994 TTTTCCTTTGGATCCTTGATGTATGTGTCTAATAATAAAGAATAAGTTTCAGAGTGAATG 687935 Query 18470 CTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTA 18529 ||||||| || || |||| || || | |||| || ||| ||||| || | Sbjct 687934 TTTTCCATCATAATTTGGAAACCGTAGAAACACTTAGCTTCTGGAATTTGAACTTCAGCA 687875 Query 18530 TAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAA 18589 | || |||| ||||| || ||||| || ||||| |||| || || || || ||||| Sbjct 687874 GAGAARTTTTCAACCAAGTTTTCATTGACAATACCATCAGAAGCAGCAAAGAAAGCCAAK 687815 Query 18590 ACATATTTAATGAAATGTTTTTCATTATCCTTGA---GATTGTTCCATTCATCTATATCT 18646 || | ||||||| | ||||||| || || | || ||||| || | || ||| Sbjct 687814 ACTCTTGAAATGAAAAATCTTTCATTTTCATTCATTCTGTTATTCCAATCGTGTAAATCC 687755 Query 18647 TTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGC 18690 || || | ||| | |||||| | ||||| ||||| | |||||| Sbjct 687754 TTAGACAAATCGATTTCTTCAGCGGTCCAGAAAGAAGCTTCGGC 687711 >seq16 Length=726111 Score = 152 bits (168), Expect = 8e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| ||||||| || ||||| || || || || |||||||| ||| | Sbjct 202339 AATGCAAATCTTTGTTAAAACTTTAACTGGTAAGACCATCACTTTAGAAGTTGAATCTAG 202398 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| ||| || ||| |||||| |||||||| ||||| || ||||| || || Sbjct 202399 TGACTCTATCGACGCTGTCAAATCTAAAATCCAAGATAAGGAAGGTATTCCTCCTGATCA 202458 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||||||||||||| |||||||| || | |||||| ||||| ||||| ||||| || Sbjct 202459 ACAAAGATTGATTTTCGCCGGTAAACAATTAGAAGATGGTAGAACATTATCTGATTACAA 202518 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| | || || ||| |||| |||||||||||||| ||| Sbjct 202519 CATTCAAAAAGAATCCACTCTCCATCTAGTCTTAAGATTAAGAGGTGGT 202567 >seq18 Length=436904 Score = 143 bits (158), Expect = 4e-29 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| || | ||||| | ||||| || || ||||| || || |||||| | Sbjct 25385 AAAATGCAAATTTTCGTAAAAACTCTAACTGGTAAGACCATTACTTTGGAGGTCGAATCT 25444 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 |||||| ||| || || || |||||| ||||| |||||||| || || || || Sbjct 25445 TCTGATTCTATCGACAATGTTAAGGCTAAAATCCAAGACAAAGAAGGTATTCCACCTGAT 25504 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 ||||||||||| || | || |||||||| | |||||| ||||||||||| || || Sbjct 25505 CAACAAAGATTAATCTTCGCTGGTAAGCAATTAGAAGATGGTAGAACTTTATCTGACTAC 25564 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 || || ||||| | || | || ||||| |||||||||||||| |||| Sbjct 25565 AACATTCAAAAAGAATCCACTTTACACTTAGTCTTAAGATTAAGAGGTGGTG 25616 >seq15 Length=137011 Score = 96.9 bits (106), Expect = 5e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 155832 TTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATT 155891 ||| | || || || || || || || || || || ||||||||| | |||| | |||| Sbjct 39105 TTTGTCAAGACCTTAACCGGTAAGACCATCACTTTGGAAGTCGAATCTGCTGAAACTATT 39046 Query 155892 TTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTG 155951 || || || || ||||| || ||||| || || || || ||||||||||| Sbjct 39045 GACGCTGTCAAGGCCAAGATCCAAGACAAGGAAGGTATTCCACCTGATCAACAAAGATTA 38986 Query 155952 ATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAA 156011 || | ||| ||||| || | ||||| ||||| ||||| ||||| || || ||| Sbjct 38985 ATCTTTGCTGGTAAACAATTAGAAGACGGTAGAACCTTATCTGATTACAACATCCAAAAA 38926 Query 156012 GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTGT 156052 || | || || || ||||| ||||||| ||||| ||||| Sbjct 38925 GAATCTACTCTACACTTAGTTCTAAGATTGAGAGGTGGTGT 38885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871835328800