Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20uvarum_20[genbank_20GCA_5F001747055.1_202016-09-27] 18 sequences; 8,807,786 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq18 187 5e-42 seq1 176 9e-39 seq16 170 4e-37 seq15 156 8e-33 >seq18 Length=436904 Score = 187 bits (206), Expect = 5e-42 Identities = 180/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | | ||| ||||| |||||||| | ||||| || || || ||||| Sbjct 25615 ACCACCTCTTAATCTTAAGACTAAGTGTAAAGTGGATTCTTTTTGAATGTTGTAGTCAGA 25556 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||| |||| |||| || ||||| |||||||| ||||||||||| |||||||||||||| Sbjct 25555 TAAAGTTCTACCATCTTCTAATTGCTTACCAGCGAAGATTAATCTTTGTTGATCAGGTGG 25496 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || |||||||| ||||| |||||| || ||||| |||||||| || ||||| || Sbjct 25495 AATACCTTCTTTGTCTTGGATTTTAGCCTTAACATTGTCGATAGAATCAGAAGATTCGAC 25436 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || | ||||||||| |||||||||| ||||| | || || |||||||| Sbjct 25435 CTCCAAAGTAATGGTCTTACCAGTTAGAGTTTTTACGAAAATTTGCATTTT 25385 >seq1 Length=1289090 Score = 176 bits (194), Expect = 9e-39 Identities = 472/726 (65%), Gaps = 12/726 (2%) Strand=Plus/Minus Query 49646 TAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAA 49705 |||||||||||| || ||||||||||||||||| ||||| ||| ||||||||| | Sbjct 688421 TAATAATCTATCAGCAACAAATTCAACATATTGGTTCATTAGATCAGCATTCATACCAAG 688362 Query 49706 TAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaat 49765 |||| || ||| | |||||| ||| || ||||| ||||| ||||||| ||| Sbjct 688361 TAATGCAACTGGAATGGCATCAACAAAGTATCTCTTTTCAATTTCAACAGCTTCAGCAAT 688302 Query 49766 tatcataattatattattttttgataa---tttatatttaatatgattcgcatatattaa 49822 || | || || || ||| ||| || | ||||| || | | | || Sbjct 688301 AATTCT--TTCAATGATCTTTGGATCTGGCTTGTTCTTTAAG-TGR---GAGAACAATAG 688248 Query 49823 ACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 49882 ||| ||||| |||||||||||||| || || ||| | || ||||| || ||||| || Sbjct 688247 ACAGGCAAAGTCAGTATGTAAACCTTCATCTCTACAGATCAATTCGTTGGAGAAAGTCAA 688188 Query 49883 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 49942 || ||||| || || | || || | ||| || || | ||||| || ||| || || Sbjct 688187 ACCAGGCATCAAACCCTTTTTCTTCAACCAGAAGATAGCAGCAAATGAACCAGAGAAAAA 688128 Query 49943 TATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAA 50002 | ||| || ||| ||||| || | | |||| | |||||| | | |||| Sbjct 688127 GACACCTTCAACAGCAGCAAAAGCAACCAGTCTTTCAGCAAACAAAGCGTCCTTATCTTG 688068 Query 50003 TATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTT 50062 ||||| | |||||||| || || |||| || || ||| ||| |||||||||| || Sbjct 688067 AATCCATCTAATAGCCCATTCAGCCTTTTCCTTAATTTCAGGAATAGTTTCTATAGCGTT 688008 Query 50063 AAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACAT 50122 ||||| || ||||| | | |||||||||||| | Sbjct 688007 TAATAAGAAATCATTTTCCTTTGGATCCTTGATGTATGTGTCTAATAATAAAGAATAAGT 687948 Query 50123 TTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATA 50182 |||||| || | |||||| ||||| || || || | ||||||| | Sbjct 687947 TTCAGAGTGAATGTTTTCCATCATAATTTGGAAACCGTAGAAACACTTAGCTTCTGGAAT 687888 Query 50183 CTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGC 50242 |||||||| | | |||| |||||| || || ||| |||||||||||||| || || Sbjct 687887 TTGAACTTCAGCAGAGAARTTTTCAACCAAGTTTTCATTGACAATACCATCAGAAGCAGC 687828 Query 50243 GAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTT---TTAAATTTTCCCA 50299 ||||| || || || | ||| ||| | ||||||| || | || || | ||| Sbjct 687827 AAAGAAAGCCAAKACTCTTGAAATGAAAAATCTTTCATTTTCATTCATTCTGTTATTCCA 687768 Query 50300 AGATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTT 50359 | | | ||| || || ||||| | |||||| ||||| || || ||| ||| | | Sbjct 687767 ATCGTGTAAATCCTTAGACAAATCGATTTCTTCAGCGGTCCAGAAAGAAGCTTCGGCTCT 687708 Query 50360 TTTATA 50365 ||||| Sbjct 687707 CTTATA 687702 >seq16 Length=726111 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||||||||| | | ||| |||| ||| | ||| | ||||| || || |||||||| Sbjct 202567 ACCACCTCTTAATCTTAAGACTAGATGGAGAGTGGATTCTTTTTGAATGTTGTAATCAGA 202508 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 |||||||| |||| || ||||||||||| || || || ||||| ||||||||||| || Sbjct 202507 TAATGTTCTACCATCTTCTAATTGTTTACCGGCGAAAATCAATCTTTGTTGATCAGGAGG 202448 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| |||||||| |||||| ||| ||| ||||| || ||||| || Sbjct 202447 AATACCTTCCTTATCTTGGATTTTAGATTTGACAGCGTCGATAGAGTCACTAGATTCAAC 202388 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| ||| ||||| ||||||||||| ||||||| ||| || |||||| Sbjct 202387 TTCTAAAGTGATGGTCTTACCAGTTAAAGTTTTAACAAAGATTTGCATT 202339 >seq15 Length=137011 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| ||||| ||||||||| | | || ||||| |||| ||||| ||||| ||| | Sbjct 38877 GTTCAATAACACCACCTCTCAATCTTAGAACTAAGTGTAGAGTAGATTCTTTTTGGATGT 38936 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | ||||||||||| |||| | || || |||||||||||||||||||||||||| |||| Sbjct 38937 TGTAATCAGATAAGGTTCTACCGTCTTCTAATTGTTTACCAGCAAAGATTAATCTTTGTT 38996 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 |||||||||| || ||||| || ||||| || || || ||| |||| || | Sbjct 38997 GATCAGGTGGAATACCTTCCTTGTCTTGGATCTTGGCCTTGACAGCGTCAATAGTTTCAG 39056 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAA 192527 ||||| ||||| | ||| ||||| ||||| ||||| || || | ||| Sbjct 39057 CAGATTCGACTTCCAAAGTGATGGTCTTACCGGTTAAGGTCTTGACAAA 39105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479772954300