Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20uvarum_20[genbank_20GCA_5F001747055.1_202016-09-27] 18 sequences; 8,807,786 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq14 230 7e-55 seq1 150 5e-31 seq12 114 4e-20 seq3 87.8 5e-12 >seq14 Length=1507144 Score = 230 bits (254), Expect = 7e-55 Identities = 602/917 (66%), Gaps = 5/917 (1%) Strand=Plus/Plus Query 155587 CAATAGACGCCAGATTACATACCGCAGTCTCCTTGTCGTCGCTGTATTCTACAATCTCAC 155646 ||| ||| || | ||||| || ||||| ||||| || || |||||| ||||| |||| Sbjct 781115 CAACAGARGCTAAGTTACAAACAGCAGTTTCCTTATCATCTGAGTATTCAACAATTTCAC 781174 Query 155647 AGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAG 155706 | || | ||||||| || || || || || ||||| || |||||||| | ||||||| Sbjct 781175 AACATAAGTTAGAAGATTTAATTGTACCCAAGTTCTTTTGATTAGATTTTTTATTACAAG 781234 Query 155707 CATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCC 155766 |||||||||| | |||| | || || || || || | || || || | || || Sbjct 781235 CATCCTTGTAAACAATGAAAGGAGTACCAGTTTCGGTTTGGGCTTCTAAGATGGCGTACC 781294 Query 155767 AGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTCATATACA 155826 | | | | || || || ||| | ||| ||||| || |||| ||| | Sbjct 781295 ATAACTTTTGAGCCTTGATGGTCTTTCTACCTCTACCTTCTAGTTCGTATTGGTCATAWA 781354 Query 155827 GCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACA 155886 || || | || ||||| ||| ||| |||| ||||| | | || | || | Sbjct 781355 GCTTTTCAAAGTCATCACCATAAGCATCRCTCAAACCAGGAGCTTCACTAGGAGAGAATA 781414 Query 155887 GCGACCAAATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCAT 155946 | |||| ||| | | || | || ||| || | ||| ||| | ||| Sbjct 781415 AAGTCCAATCACCATTTGCCTTGACTCTCTTCATGAACAAGTCAGGAATCCATAAAGCTG 781474 Query 155947 AGAAAAGGTCCCTTGCCTTTGACTCCT-CATCGCCGTGATTCTTCCGTAGCTCTAAGAAT 156005 ||| | || || || | ||| | || | | |||||||| || | | || | ||| Sbjct 781475 GGAATAAATCTCTAGC-TCTGATTTCTTCCTTACCGTGATTTTTTCTGATGTCGATGAAA 781533 Query 156006 TCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG--- 156062 || ||||||| || ||| || || |||| |||||| |||| || ||| Sbjct 781534 TCAAAGATATCAGAGTGCCATGGTTCTAGGTACAGAGCAAAGGCACCAGGTCTTTTGTTA 781593 Query 156063 CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCA 156122 ||||| ||||| ||||| | ||||| || ||||| || | | ||||||||| | |||| Sbjct 781594 CCACCTTGATCAACATATCTGGCAGTGTTGTTGAAAACTCTAACCATAGGAATCAAACCA 781653 Query 156123 TTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGT 156182 |||||||| |||||||| || ||| | || |||| || | | || ||||| ||| Sbjct 781654 TTGGAAGTACCATTGGTACCAGCAATGTAAGAGCCAGTGGATCTGATGTTGTGAATGTGT 781713 Query 156183 AGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATA 156242 | ||||||||||| | |||||||||||||| |||||||| | |||| | ||| Sbjct 781714 AAACCAATACCACCKGCAGTCTTAGAAATTTGAGCACATTCCTTYAAGGTATCATAGATA 781773 Query 156243 CCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGT 156302 || |||||||||||||| | ||| || | || | || ||| | |||||||| ||| Sbjct 781774 CCGTCAATAGAATCATCCTTCATAGAAATTAAGAAACAAGAAGACATTTGAGGTCTTGGA 781833 Query 156303 GTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCG 156362 || ||||| ||||||||||| || | ||||| |||| || | | |||||| | | | Sbjct 781834 GTACCAGCATTGAATAGTGTTGGAGAAGCATGGGTAAAGTATCTTTGAGACATCAAGTTG 781893 Query 156363 TATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCAC 156422 || || || | | || |||| || ||||| |||| | || || ||||| | Sbjct 781894 TAAGTTTCGATGACTTTTTCAATGTTTTCACCGTGGATACCAACAGCAACTCTCATRATC 781953 Query 156423 ATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGA 156482 | ||| || || | || || ||| |||| || || | ||||| | ||||| Sbjct 781954 AAATGTTGTGGTCTTTCAACGATCTTACCATTGATCTTCAATAAGTATGATCTTTCCAAT 782013 Query 156483 GTTTTAAACCCGAAATA 156499 || || || || ||||| Sbjct 782014 GTCTTGAAACCAAAATA 782030 Score = 91.5 bits (100), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 301854 CTTGGACGCAACACCAGCAAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACC 301913 |||||| |||||||| ||||| ||||||||||| | ||| | |||||||| || ||||| Sbjct 984423 CTTGGAGGCAACACCGGCAAAATGGAAAGTATTTAAAGTCATTTGAGTAGCAGGTTCACC 984364 Query 301914 AATACTTTGTGCCGCAATCATACCAACCATTTCTCCTGGTGCTACAATAGACTT 301967 |||| ||| || || | | ||| |||||||| || || |||||||| || Sbjct 984363 AATAGATTGAGCTGCCAAAACACCRACCATTTCACCAGGATGAACAATAGATTT 984310 Score = 87.8 bits (96), Expect = 5e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 302554 TCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTT 302613 |||||| || |||||| ||||||| | ||| | || | | ||||||||||||||| Sbjct 983705 TCATAATGAACCATAATATCTTCCAAAGCCTTAACCAATCTTCTTTGAATATAACCAGTT 983646 Query 302614 GTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAAT 302673 || || || ||||| |||||||| | ||| | | ||||||||| ||||||||||| Sbjct 983645 TCAGCAGTCTTAACAGCAGTATCAATCAAACCTTCTCTACCACCCATGGCATGGAAGAAG 983586 Query 302674 AGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACC 302720 | |||| ||| ||| || | | | || | ||||| ||||| Sbjct 983585 AATTCTTGTGGTGTTAGACCTCTTAAGTARGAATTTTCAACAAAACC 983539 >seq1 Length=1289090 Score = 150 bits (166), Expect = 5e-31 Identities = 336/498 (67%), Gaps = 20/498 (4%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| ||||| | | ||| || ||| || |||| ||| ||||| || || | Sbjct 433549 CTATCAAATCTACCCGGTCTAGTCAAAGCTTTATCCAATAAATCAGCTCTATTAGTACCR 433490 Query 288910 GCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTT--AAAATTTGAT 288967 || || ||||||| | || | || || ||||| || || |||||||| | Sbjct 433489 GCTAAAACAACAACATGGTCATCTGATTTGAAACCATC--TAGTTCGACCAAAATTTGGT 433432 Query 288968 TAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttt 289027 | | || ||| ||||||||||| ||| || | | | | | ||| | Sbjct 433431 TTAAAGTGGCTTCTCTTTCATCATTACCACCACTAGCACCTC-----TGGCT-------T 433384 Query 289028 tACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTG 289087 |||||| ||||| ||||| ||||||||||| | || || | ||||| ||| || || Sbjct 433383 TACCAATGGCATCGATTTCATCAATGAAAATGATACTTGGGGCATTTTTTCTGGCTGTTT 433324 Query 289088 CAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAG 289147 |||||| |||||||| | ||| || || | ||| ||| |||| || |||||||||| | Sbjct 433323 CAAATAGATCTCTTACTCTGGAAGCACCCATACCTACAAACATCTCAACAAATTCAGCAC 433264 Query 289148 CGGATACTTGAAT-GAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | || || |||| ||||| ||| ||| || || || |||| | |||| ||| ||| Sbjct 433263 CAGAAACA-GAATAGAATGGCACACCTGCCTCACCGGCAGTTGCCTTGGCCAAAAGAGTC 433205 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGAC 289266 |||||||| || || || || || | | | || | |||| | |||| || Sbjct 433204 TTACCTGTACCTGGAGGACCAGACAAAATAGCACCTCTAGGTAATCTTGCACCTAATTTT 433145 Query 289267 TTATATTTCTCAGGGCTCT-TTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 | |||||| || || ||| | ||||| | |||| |||| || ||| | ||| || || Sbjct 433144 TCATATTT-TCTAGGATCTCTCAAAAAATGAACAAATTCCATAATTTCTTGTTTAGCTTC 433086 Query 289326 ATCACATCCTGCTACATC 289343 ||||||||| || ||||| Sbjct 433085 ATCACATCCAGCAACATC 433068 Score = 114 bits (126), Expect = 4e-20 Identities = 458/704 (65%), Gaps = 20/704 (3%) Strand=Plus/Plus Query 133203 ATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTC 133262 |||||| | ||| ||||| | | || || || |||||||| |||||||||||| Sbjct 687790 ATGAAAGATTTTTCATTTCAAGAGTMTTGGCTTTCTTTGCTGCTTCTGATGGTATTGTCA 687849 Query 133263 TTGAAAATTTAG--GAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCC-GTGCCT 133319 |||||| || | ||| | | | || ||||||||| | | ||||| ||| | Sbjct 687850 ATGAAAACTTGGTTGAAAAYT-TCTCTGCT-GAAGTTCAAATTCCAGAAGCTAAGTGT-T 687906 Query 133320 TTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTAATTG 133379 | || || | || ||| ||||||||| || || ||| || |||||| || | | Sbjct 687907 TCTACGGTTTCCAAATTATGATGGAAAACATTCACTCTGAAACTTATTCTTTATTATTAG 687966 Query 133380 ATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATTAGCGAAT-TT 133438 | || |||||||| ||| | | || | |||| ||||| || || | | || Sbjct 687967 ACACATACATCAAGGATCCAAAGGAAAATGATTTCTTATTAAACGCTAT-AGAAACTATT 688025 Query 133439 CCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGT 133498 ||| ||||| | || |||| |||||||||| |||||| || || ||| || Sbjct 688026 CCTGAAATTAAGGAAAAGGCTGAATGGGCTATTAGATGGATTCAAGATAAGGACGCTTTG 688085 Query 133499 TTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTC 133558 |||||| | || ||||||||||||| || || || | |||||| |||| | || Sbjct 688086 TTTGCTGAAAGACTGGTTGCTTTTGCTGCTGTTGAAGGTGTCTTTTTCTCTGGTTCATT- 688144 Query 133559 TGCT-CTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGA 133617 |||| |||| || ||| | || || ||| | | ||||| || ||| || ||||| Sbjct 688145 TGCTGCTATCTTCTGGTTGAAGAAAAAGGGTTTGATGCCTGGTTTGACTTTCTCCAACGA 688204 Query 133618 ACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTTACTTCACTCTAAATT 133677 | | || | || || || | | || || || |||||| | || | ||| | || Sbjct 688205 ATTGATCTGTAGAGATGAAGGTTTACATACTGACTTTGCCTGTCTATTGTTCTCYCACTT 688264 Query 133678 AGAGCGACCACTCA-AAAAGAATAAGATTGAAGAAATTATTAGAGAAGCGGTTGAAATTG 133736 | || || | || | || | |||||| ||||||| ||||| |||||||||| Sbjct 688265 AAAG-AACAAGCCAGATCCAAAGATCATTGAAAGAATTATTGCTGAAGCTGTTGAAATTG 688323 Query 133737 ---AGGTTGAATTTATCAATAGTGCTCTGCC-GTGCCGTTTAATTGGTATGAATGATGTG 133792 || | ||| | | ||| | || || | ||| |||||||||||| || Sbjct 688324 AAAAGAGATACTTTGT---TGATGCCATTCCAGTTGC-ATTACTTGGTATGAATGCTGAT 688379 Query 133793 CTGATGCAGCGTTATATTGAATTTGTAGCTGACAGATTGGCCGTTCAGTTAGGTGGGGAT 133852 || ||| | | ||| |||||||||| ||||| ||||| ||| |||||| || Sbjct 688380 CTAATGAACCAATATGTTGAATTTGTTGCTGATAGATTATTAGTTGCCTTAGGTAACGAA 688439 Query 133853 AAGATTTACGGTTCCGCCAATCCATTCGACTGGATGGAGAGCAT 133896 ||| | | | | | |||| |||||||||| ||||| | ||| Sbjct 688440 AAGCTGTTCAATGTCACCAACCCATTCGACTTTATGGAAAACAT 688483 >seq12 Length=1055690 Score = 114 bits (126), Expect = 4e-20 Identities = 247/367 (67%), Gaps = 20/367 (5%) Strand=Plus/Plus Query 380907 AGAACTACTATGGTTTATTAAGGGTGATACATCAAACAGAAGGCTAAAGGCACAGAATG- 380965 |||||| || |||||| ||||||| ||||| |||| || ||| | | |||| | Sbjct 820114 AGAACTTCTTTGGTTTGTTAAGGGAGATACCAATAACAAAAATCTACAA--AAAGAAGGC 820171 Query 380966 -TAAAAATCTGGAATGGTAATGGTAGTCGTGAGTTTTTAGATTCCCGTGGTCTAACCAAT 381024 | ||||| ||| ||||||||||| |||| | | ||||||| | ||| |||| | Sbjct 820172 GTCAAAATTTGGGATGGTAATGGTTCTCGTSAATACCTAGATTCTCTTGGGTTAACTGAC 820231 Query 381025 AACGAAGAAGATGACCTTGGTCCTATTTACGGATTTCAGTGGAGACATTTTAACGCCGAT 381084 | ||||||| ||| | |||||| |||| || || || |||||||||||| || || Sbjct 820232 AGAGAAGAAGGTGATTTAGGTCCTGTTTATGGTTTCCAATGGAGACATTTTGGTGCTGAA 820291 Query 381085 TATGATAATTGTGATAGTGATTATACTGGTAAGGGTGTCGACCAGTTAAAATATATCATA 381144 |||| | ||||| | | ||| || || || || ||| || |||| |||| || Sbjct 820292 TATGTTGATTGTCACACTGACTACACAAACAAAGGATACGATCAATTAAGCGATATAATT 820351 Query 381145 GACCAGCTAAA---AAATCCTGAAACAAGAAATTCACGCCGACTAATTATGACTGCGTGG 381201 | || | || |||||| | |||| || | || ||| |||| ||| Sbjct 820352 CATAAGTTGAAGACCAATCCTTACGATAGAA---------GAATCATCATGTCTGCTTGG 820402 Query 381202 AATCCTTGCCAGA--TTAATGATATGGCTTTACCACCTTGCCATATTTTATGCCAGTTCA 381259 ||||| ||||| |||| | |||||| | || || ||||| |||| || || ||| Sbjct 820403 AATCC--ACCAGACTTTAAGAAAATGGCTCTTCCGCCATGCCACGTTTTCTGTCAATTCT 820460 Query 381260 ATGTTTC 381266 ||||||| Sbjct 820461 ATGTTTC 820467 Score = 86.0 bits (94), Expect = 2e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 252530 TATCCATCCTATTATCATAATTTGTAACATACATACCAAGCGCCTGCTTTCCCATAGCAC 252589 ||||||| ||| | ||| || || | | | ||| | || ||||| ||||||||| Sbjct 610457 TATCCATTCTAAAGTTATAGTTAGTCAAGAAAACACCCATGGCTTGCTTACCCATAGCAG 610516 Query 252590 TCTGGTAAGTATTTCTGGGAGACTGATTGTTTTCCGGGAAAGGAATGCATGATGCTACAA 252649 || ||||||||||| ||||| ||||||| || ||||||||||| || || ||| Sbjct 610517 ATTGATAAGTATTTCTAGGAGATTGATTGTGATCTGGGAAAGGAATAATAGAAGCAGCAA 610576 Query 252650 CACCGAAGATAGTGCTTGGGTGAATTTCACAGTGA 252684 |||| || || || || ||||||||||| ||| Sbjct 610577 CACCTAAAATCATGGAAGGATGAATTTCACAATGA 610611 >seq3 Length=129837 Score = 87.8 bits (96), Expect = 5e-12 Identities = 270/415 (65%), Gaps = 7/415 (2%) Strand=Plus/Minus Query 288937 TTAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAA 288996 || || |||||||| ||| | |||||| | ||| | ||| ||||||||||| | Sbjct 76373 TTGAACCCATCCATTTCAATTAGTAATTGATTCAATGTATTTTCTCTTTCATCATT---A 76317 Query 288997 CCTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAA 289056 || | ||| || | |||||||| |||| |||||||||||| |||||||| Sbjct 76316 CCATTGGAAATCTTGTTATTATTTCTTTTTTTTCCAATAGCATCAATTTCATCAATGAAG 76257 Query 289057 ATCACACACGGA--GAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTC 289114 || | ||| ||| || | ||| |||| | || || ||||||| ||| || | Sbjct 76256 ATTATACAGGGACTCAAAGT--TCTGGCAAGTTTGAACAAGTCTCTTATACGACTGGCAC 76199 Query 289115 CAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTG 289174 ||| ||| ||| |||| || ||||| || ||| | || | ||| |||| ||| | Sbjct 76198 CAACACCTACAAACATCTCAACAAACTCTGAACCAGAAATGCTAATAAATGGAACACCCG 76139 Query 289175 CTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATA 289234 ||||| | ||| | || | ||| |||||||| || ||||| || || | ||| | Sbjct 76138 CTTCGTTAGAACATGCTTTAGCTAAAAGAGTCTTACCGGTACCAGGAGGACCATGTAAGA 76079 Query 289235 GAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATT 289294 | || ||||| | || || ||| || || | ||| | || ||||| | Sbjct 76078 TACACCCTTTTGGAATCTTGGCACCAAGGTTGTTGTAAAGATGTGGGTTTTTCAAAAAAT 76019 Query 289295 CTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAA 289349 |||||| ||| || |||| ||| | || | || || || ||||| |||| Sbjct 76018 CTACAAACTCCATAATTTCAGTTTTAGATTCTTGGCACCCAGCAACATCCTCAAA 75964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817260562066