Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20uvarum_20[genbank_20GCA_5F001747055.1_202016-09-27] 18 sequences; 8,807,786 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq15 215 1e-50 seq18 170 4e-37 seq16 165 2e-35 seq12 100 6e-16 >seq15 Length=137011 Score = 215 bits (238), Expect = 1e-50 Identities = 179/219 (82%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| |||||||| | ||||||||||| |||||||||||||| || || || |||||||| Sbjct 38887 ACCACCTCTCAATCTTAGAACTAAGTGTAGAGTAGATTCTTTTTGGATGTTGTAATCAGA 38946 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || ||||||||||||||| |||||| ||||||||||||| |||||||||||| || || Sbjct 38947 TAAGGTTCTACCGTCTTCTAATTGTTTACCAGCAAAGATTAATCTTTGTTGATCAGGTGG 39006 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| ||||| ||||| || || ||| ||||| || ||| || ||| || Sbjct 39007 AATACCTTCCTTGTCTTGGATCTTGGCCTTGACAGCGTCAATAGTTTCAGCAGATTCGAC 39066 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 ||||||||| || ||||| || || || ||||| ||||| Sbjct 39067 TTCCAAAGTGATGGTCTTACCGGTTAAGGTCTTGACAAA 39105 >seq18 Length=436904 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| ||||| || | | |||||||| | ||| |||||||| || || || || ||||| Sbjct 25615 ACCACCTCTTAATCTTAAGACTAAGTGTAAAGTGGATTCTTTTTGAATGTTGTAGTCAGA 25556 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | ||||||| ||||||| ||| || ||||| ||||||| |||||||||||| || || Sbjct 25555 TAAAGTTCTACCATCTTCTAATTGCTTACCAGCGAAGATTAATCTTTGTTGATCAGGTGG 25496 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||| || ||||| || || || || ||||| || || | |||| || ||| || Sbjct 25495 AATACCTTCTTTGTCTTGGATTTTAGCCTTAACATTGTCGATAGAATCAGAAGATTCGAC 25436 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||||||| || ||||| || || | || ||||| || || |||||| Sbjct 25435 CTCCAAAGTAATGGTCTTACCAGTTAGAGTTTTTACGAAAATTTGCATT 25387 >seq16 Length=726111 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| ||||| || | | |||| || ||||| |||||||| || || || |||||||| Sbjct 202567 ACCACCTCTTAATCTTAAGACTAGATGGAGAGTGGATTCTTTTTGAATGTTGTAATCAGA 202508 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || ||||||| ||||||| |||||| || || || || | |||||||||||| ||||| Sbjct 202507 TAATGTTCTACCATCTTCTAATTGTTTACCGGCGAAAATCAATCTTTGTTGATCAGGAGG 202448 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||||||||| || || | ||| ||| || || | ||| ||| ||| || Sbjct 202447 AATACCTTCCTTATCTTGGATTTTAGATTTGACAGCGTCGATAGAGTCACTAGATTCAAC 202388 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||| ||||| || ||||| || || || || || ||||| || |||||| Sbjct 202387 TTCTAAAGTGATGGTCTTACCAGTTAAAGTTTTAACAAAGATTTGCATT 202339 >seq12 Length=1055690 Score = 100 bits (110), Expect = 6e-16 Identities = 134/184 (73%), Gaps = 3/184 (2%) Strand=Plus/Minus Query 143985 GATCCAGTCTTGCATATAGAACTTAGGAGATGGGCTGATGTTTTTATTATAGCGCCCTTA 144044 |||||| ||||| | |||||||| |||||||||||||| ||| |||| ||||| || Sbjct 1012289 GATCCAACTTTGCAAGTTGAACTTAGAAGATGGGCTGATGTATTTGTTATYGCGCCATTG 1012230 Query 144045 ACAGCAAATACGTTAGCAAAAATAGCCAATGGTATATGCGATAATTTACTAACATCTATA 144104 | |||||||| ||||| ||||| ||||||||||| || ||| || | || ||| Sbjct 1012229 AGTGCAAATACCTTAGCCAAAATTAGCAATGGTATATCTGACAATCTATTGACTAACATA 1012170 Query 144105 GTAAGAGCCTGG-GATATAAATAAACCTCTTATTTTTTG--CCCCGCTATGAATACCCTT 144161 || |||| |||| | | | ||| ||| | |||| || ||||||||||| || Sbjct 1012169 GTCAGAGGCTGGCCAGTCACCTCAACTCCTTTGTATTTGGCACCTGCTATGAATACTTTT 1012110 Query 144162 ATGT 144165 |||| Sbjct 1012109 ATGT 1012106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826973566102