Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20uvarum_20[genbank_20GCA_5F001747055.1_202016-09-27] 18 sequences; 8,807,786 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq14 242 9e-59 seq1 174 4e-38 seq6 123 6e-23 seq12 89.7 1e-12 >seq14 Length=1507144 Score = 242 bits (268), Expect = 9e-59 Identities = 580/870 (67%), Gaps = 21/870 (2%) Strand=Plus/Minus Query 110302 ACTATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCA 110361 |||||||||||||||| || | ||| | | || ||| | ||||||| ||||| Sbjct 782032 ACTATTTTGGTTTCAAGACATTGGAAAGATCATACTTATTGAAGATCAATGGTAAGATCG 781973 Query 110362 TTGAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTA 110421 ||||| | || ||||| || | | | ||||| ||||||| || || | | ||| Sbjct 781972 TTGAAAGACCACAACATTTGATYATGAGAGTTGCTGTTGGTATCCACGGTGAAAACATTG 781913 Query 110422 AAGCTGTTATTGAATGTTA-----TGATGTATTAAGTAAAAAGAAAGCT-ATTCATGCTA 110475 || || || ||| ||| |||||| | || ||| | | | |||||| Sbjct 781912 AAAAAGTCATCGAAACTTACAACTTGATGTCTCAA------AGATACTTTACCCATGCTT 781859 Query 110476 CTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTC-TA 110534 |||| || ||||| || || || ||| || ||| || ||||||| |||||| | Sbjct 781858 CTCCAACACTATTCAATGCTGGTACTCCAAGACCTCAAATGTCTTCTTG-TTTCTTAATT 781800 Query 110535 GGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAA-GAAACTGCTCTTAT 110593 || || |||||||||||||| ||||| |||||| | ||| || ||| ||||| || Sbjct 781799 TCTATGAAGGATGATTCTATTGACGGTATCTATGATAC-CTTRAAGGAATGTGCTCAAAT 781741 Query 110594 TTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAA 110653 |||||| | | || || |||||| | ||| |||| | || | || | || | | Sbjct 781740 TTCTAAGACTGCMGGTGGTATTGGTTTACACATTCACAACATCAGATCCACTGGCTCTTA 781681 Query 110654 TATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGA 110713 || || | || ||| |||| | ||| | |||| ||| | ||||| |||||| | Sbjct 781680 CATTGCTGGTACCAATGGTACTTCCAATGGTTTGATTCCTATGGTTAGAGTTTTCAACAA 781621 Query 110714 CACTGCAAAATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCT 110770 |||||| | |||||| ||||||||||| || ||| ||| | |||||| | || || Sbjct 781620 CACTGCCAGATATGTTGATCAAGGTGGTAACAAAAGACCTGGTGCCTTTGCTCTGTACCT 781561 Query 110771 CGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGA 110830 ||||| ||||| || ||||| ||||| ||| | || | | |||||||| || || Sbjct 781560 AGAACCATGGCACTCTGATATCTTTGATTTCATCGACATCAGAAAAAATCACGGTAAGGA 781501 Query 110831 AGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACG 110890 |||| ||||| | |||||||| || | |||||| | || || |||||||| | Sbjct 781500 AGAAATCAGAGCTAGAGATTTATTCCCAGCTTTATGGATTCCTGACTTGTTCATGAAGAG 781441 Query 110891 TGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTATCTGA 110950 || | | |||||| ||| || | | | |||| | |||||||| | || Sbjct 781440 AGTCAAGGCAAATGGTGATTGGACTTTATTCTCTCCTAGTGAAGCTCCTGGTTTGAGYGA 781381 Query 110951 TGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCG 111010 || ||||| | || |||||| | || || || |||| ||| |||||| | | | Sbjct 781380 TGCTTATGGTGATGACTTTGAAAAGCTWTATGACCAATACGAACTAGAAGGTAGAGGTAG 781321 Query 111011 CAAACAAATTCCA-GCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTG 111069 ||| | || | |||||| | | |||| | ||| | ||| | ||| ||||||| Sbjct 781320 -AAAGACCATCAAGGCTCAAAAGTTATGGTACGCCATCTTAGAAGCCCAAACCGAAACTG 781262 Query 111070 GAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAG 111129 | ||||||| ||| | || || ||| | |||| ||||||||||||| ||| || | Sbjct 781261 GTACTCCTTTCATTGTTTACAAGGATGCTTGTAATAAAAAATCTAATCAAAAGAACTTGG 781202 Query 111130 GAACAATTAAGTCTAGTAATTTGTGCTGTG 111159 | |||||||| ||| ||| || || |||| Sbjct 781201 GTACAATTAAATCTTCTAACTTATGTTGTG 781172 Score = 100 bits (110), Expect = 7e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 ||||| |||||||| ||||| || || ||||||||||| |||||||| || | ||| || Sbjct 982471 GTTCTTTTCAATAGACAACCTTCTCTACATAAAATGTCCATGATGGCACACAGAGTAAAG 982530 Query 305390 GTATTATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGAT 305449 || | || | || || |||| ||| | || | | | ||||||||||| ||| Sbjct 982531 GTCATGCCTTATTCCACCTTCAGATTGAATCTGTCTGTTACTTCTCCTTATAATGCTGAT 982590 Query 305450 TTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 || ||||| || ||||||||| | ||||| ||||| Sbjct 982591 TTCGATGGTGACGAAATGAATTTACATGTCCCTCA 982625 >seq1 Length=1289090 Score = 174 bits (192), Expect = 4e-38 Identities = 484/731 (66%), Gaps = 31/731 (4%) Strand=Plus/Plus Query 131468 TATAAGAAATCTGTTGCGGCCTTCTGGACTGTTGAAGAGATCGATATGACCAAAGATATT 131527 ||||||| | | | || | |||||||| | |||||| |||||| || | || ||| | Sbjct 687702 TATAAGAGAGCCGAAGCTTCTTTCTGGACCGCTGAAGAAATCGATTTGTCTAAGGATTTA 687761 Query 131528 GATGATTGGGAAAAATTAACCTTGAATGAAAA----AGATTTTG--TTTCCAAAGTTCTT 131581 | |||||| | || || |||||||||| ||||||| |||| | ||| | Sbjct 687762 CACGATTGGAATAACAGAA---TGAATGAAAATGAAAGATTTTTCATTTCAAGAGTMTTG 687818 Query 131582 GCATTCTTCGCCGGAAGTGATGGCATTGTTATTGAAAATCTTGTTATTAATTTCATTCAA 131641 || ||||| || | |||||| ||||| | |||||| | ||| || ||| | Sbjct 687819 GCTTTCTTTGCTGCTTCTGATGGTATTGTCAATGAAAACTTGGTTGAAAAYTTCTCTGCT 687878 Query 131642 GAAATTGATATTCCTGAAGTAACATCGTTCTACACATTTCAAGCCGCTGTTGAATCTATT 131701 ||| || | ||||| |||| | | |||||| || ||| | ||| ||| Sbjct 687879 GAAGTTCAAATTCCAGAAGCTAAGTGTTTCTACGGTTTCCAAATTATGATGGAAAACATT 687938 Query 131702 CATAGCGAGATGTATTCATTATTGATTGAGAGTCTTG--TTAAAAATGAAGATGATAAAA 131759 || || | ||||| ||||| ||| ||| | | | || || | | || || Sbjct 687939 CACTCTGAAACTTATTCTTTATT-ATT-AGACACATACATCAAGGATCCAAAGGAAAATG 687996 Query 131760 ATAAATTATTTGATGCTGTAAATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTA 131819 || ||||| | ||| || | | |||||| |||||| | || || |||||||||| Sbjct 687997 ATTTCTTATTAAACGCTATAGAAACTATTCCTGAAATTAAGGAAAAGGCTGAATGGGCTA 688056 Query 131820 TTAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGACTTGTAGCTTTTGCTTGTG 131879 ||| ||||||||||||| | |||| ||| || |||||| || ||||||||| || Sbjct 688057 TTAGATGGATTCAAGATAAGGACGCTTTGTTTGCTGAAAGACTGGTTGCTTTTGCTGCTG 688116 Query 131880 TTGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGAT 131939 |||||||| | || || || ||| | || ||||||||| ||| | ||||| || | Sbjct 688117 TTGAAGGTGTCTTTTTCTCTGGTTCATTTGCTGCTATCTTCTGGTTGAAGAAAAAGGGTT 688176 Query 131940 TGATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAGCATTGCATACTG 131999 |||||||||| | | || ||||| |||| |||| |||||||||| || ||||||| Sbjct 688177 TGATGCCTGGTTTGACTTTCTCCAACGAATTGATCTGTAGAGATGAAGGTTTACATACTG 688236 Query 132000 AATTTGC---TATATTAATCTATAGAAAATTTGCTGATAAACTTGATGAAAATAATATTA 132056 | ||||| | |||| ||| | || | || | ||| ||| | ||| Sbjct 688237 ACTTTGCCTGTCTATTGTTCTCY---CACTTAAAGAACAAGCCAGATCCAAAGATCATTG 688293 Query 132057 AACAACTTATAAGCGAAGCAGTTGATATCGAGAAG---GAGTTTATTACAGAAGCTTTGC 132113 || | |||| ||||| ||||| || || ||| | ||| || || || | | Sbjct 688294 AAAGAATTATTGCTGAAGCTGTTGAAATTGAAAAGAGATACTTTGTT---GATGCCATTC 688350 Query 132114 C--TTGCAATTTGATTGGGATGAATGCTGACTCT-ATGAAGGAGTACATTGAATTCGTTG 132170 | ||||| || |||| ||||||||||| ||| ||||| | || ||||||| |||| Sbjct 688351 CAGTTGCA--TTACTTGGTATGAATGCTGA-TCTAATGAACCAATATGTTGAATTTGTTG 688407 Query 132171 CTGATCGTTTA 132181 ||||| | ||| Sbjct 688408 CTGATAGATTA 688418 >seq6 Length=996468 Score = 123 bits (136), Expect = 6e-23 Identities = 207/303 (68%), Gaps = 3/303 (1%) Strand=Plus/Plus Query 167627 CATAGTGTCAAAAACATCGATGAAACTTTTCCAGATTTTTATCGAACCACGTCGTTTGCA 167686 ||| || | |||| ||| |||||| |||||| || ||| || ||||| ||| || Sbjct 454316 CATGGTATTAAAAGTATCAATGAAATATTTCCAAGTTCTTACATTACAACGTCTTTTACA 454375 Query 167687 TTCATCGTAAAAACCATAGTCTCTTGAGATATCAGCACATTCGTGATTTCCTCTTAATAA 167746 ||||| ||||| ||||| |||| | || | |||||||||||||| ||||||||||| Sbjct 454376 CTCATCATAAAATCCATATACTCTAGTGACACTGGCACATTCGTGATTACCTCTTAATAA 454435 Query 167747 AATTATGTTATTTNNNNNNNNNNNNNTGTAGCAAAATAATAACAAAATTGTTTCTAATGA 167806 || | ||| | | ||||||| || || | ||| |||||||| || || Sbjct 454436 AAAGAAGTTTTCTGGATACTTGATCTTGTAGCATAACAAAAGCAATATTGTTTCCAAAGA 454495 Query 167807 TTTAACACCTCTATCAACATAATCACCTAAAAATATATATTTATTTTGGTTTGAAGGATT 167866 || ||||||||| ||||||||||||| |||| | | ||| | | ||| Sbjct 454496 TTGTTTACCTCTATCGACATAATCACCTAGGAATA---AGTAATTGGACGTAGGGGGAAA 454552 Query 167867 ATCTAGTTTTTTAAAAATATTCAATAAATCACTAAATTGACCATGTAAATCACCTACAAC 167926 | | ||||| ||| || | | |||||| ||||| ||||| | |||||| |||| Sbjct 454553 ACCACATTTTTCAAACATTCTGATCAAATCATGGAATTGTCCATGAACATCACCAACAAT 454612 Query 167927 CTT 167929 ||| Sbjct 454613 CTT 454615 >seq12 Length=1055690 Score = 89.7 bits (98), Expect = 1e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 305286 AAATTAATGATATTGTTATCAGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGC 305345 ||||| ||||||||| |||||| | | || |||| ||| | || ||||| | Sbjct 912375 AAATTGGGGATATTGTTGAAAGACATATAGAAGATGGTGATATTGTTTTATTYAATAGAC 912434 Query 305346 AACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGA 305405 | || || |||||| | | ||||| | | ||| | | ||| | | || | | Sbjct 912435 ARCCTTCTTTGCATAGACTATCTATCTTATCCCATTATGCTAAAATTAGACCTTGGAGAA 912494 Query 305406 CATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAA 305465 |||| ||||||| | | ||| |||||| || ||||| || ||||||||||| ||||||| Sbjct 912495 CATTCAGATTAAACGAATGTGTTTGTACACCATATAACGCTGATTTTGATGGTGATGAAA 912554 Query 305466 TGAATATGCATGTACCTCAA 305485 ||||| | ||||| || ||| Sbjct 912555 TGAATTTACATGTTCCACAA 912574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812526291298