Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20uvarum_20[genbank_20GCA_5F001747055.1_202016-09-27] 18 sequences; 8,807,786 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq18 165 2e-35 seq16 161 2e-34 seq15 150 4e-31 seq14 96.9 8e-15 >seq18 Length=436904 Score = 165 bits (182), Expect = 2e-35 Identities = 168/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| | ||| | ||| | ||||||||||||||| | ||||| || | |||||||| || Sbjct 25603 TCTTAAGACTAAGTGTAAAGTGGATTCTTTTTGAATGTTGTAGTCAGATAAAGTTCTACC 25544 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||||| ||||| ||||||||||| | || |||||| || || ||||||||||| || Sbjct 25543 ATCTTCTAATTGCTTACCAGCGAAGATTAATCTTTGTTGATCAGGTGGAATACCTTCTTT 25484 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||||||||| || ||| ||| ||||| | || || | ||| || || || || || Sbjct 25483 GTCTTGGATTTTAGCCTTAACATTGTCGATAGAATCAGAAGATTCGACCTCCAAAGTAAT 25424 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || || | |||||||| ||| | ||||||||| Sbjct 25423 GGTCTTACCAGTTAGAGTTTTTACGAAAATTTGCATTTT 25385 >seq16 Length=726111 Score = 161 bits (178), Expect = 2e-34 Identities = 166/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| | ||| || |||||||||||||||||||| | |||||||| | || ||||| || Sbjct 202555 TCTTAAGACTAGATGGAGAGTGGATTCTTTTTGAATGTTGTAATCAGATAATGTTCTACC 202496 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||||| || || || ||||| || | || |||||| || || |||||||||||||| Sbjct 202495 ATCTTCTAATTGTTTACCGGCGAAAATCAATCTTTGTTGATCAGGAGGAATACCTTCCTT 202436 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||| || || ||||| ||||| | ||| | ||| || ||||| ||||| Sbjct 202435 ATCTTGGATTTTAGATTTGACAGCGTCGATAGAGTCACTAGATTCAACTTCTAAAGTGAT 202376 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||||| || || |||||||| | || | ||||||| Sbjct 202375 GGTCTTACCAGTTAAAGTTTTAACAAAGATTTGCATT 202339 >seq15 Length=137011 Score = 150 bits (166), Expect = 4e-31 Identities = 154/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||| || || | ||| ||||| ||||||||||||| |||||||| | || ||||| || Sbjct 38899 TCTTAGAACTAAGTGTAGAGTAGATTCTTTTTGGATGTTGTAATCAGATAAGGTTCTACC 38958 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||||| || || ||||| ||||| | || |||||| || || |||||||||||||| Sbjct 38959 GTCTTCTAATTGTTTACCAGCAAAGATTAATCTTTGTTGATCAGGTGGAATACCTTCCTT 39018 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||||||||| ||| ||||| || || || || | | ||| || || || ||||| Sbjct 39019 GTCTTGGATCTTGGCCTTGACAGCGTCAATAGTTTCAGCAGATTCGACTTCCAAAGTGAT 39078 Query 225678 CGTCTTGCCCGTCAAAGTTTT 225698 ||||| || || || || || Sbjct 39079 GGTCTTACCGGTTAAGGTCTT 39099 >seq14 Length=1507144 Score = 96.9 bits (106), Expect = 8e-15 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| |||||||||||||| || || ||||| || || || |||||||| ||||||||||| Sbjct 192601 GAAAATTTGACCATCAGTGATGGAAATAACGTTAGTTGGAATATAAGCGGAAACATCACC 192660 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATT 4580 |||| ||||| | ||| ||||| || || | || |||||||| || || Sbjct 192661 ACCTTGGGTTTCAATAACTGGTAAAGCAGTCATGGAACCACCACCTAATTT 192711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192530924972492