Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hanseniaspora_20uvarum_20[genbank_20GCA_5F001747055.1_202016-09-27] 18 sequences; 8,807,786 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1 291 7e-74 >seq1 Length=1289090 Score = 291 bits (322), Expect = 7e-74 Identities = 593/865 (69%), Gaps = 17/865 (2%) Strand=Plus/Minus Query 4235 GGACTTTGAACAAACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGT 4294 |||||| | | ||||||| ||||| || || || |||| |||||| |||||||| || Sbjct 688559 GGACTTGGCAATAACACCAGCCTTTTGATAATCAGAAACTCTCTTTTCAAAGAAATTGGT 688500 Query 4295 TTTGCCTTCTAACGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTT 4354 || || |||| || || ||||||||||| || || || || || | ||| | | || Sbjct 688499 CTTACCAGCTAAGGATATGTTTTCCATAAAGTCGAATGGGTTGGTGACATTGAACAGCTT 688440 Query 4355 TTC-ACACTTTAGAGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGA 4413 ||| || | || || || | |||| ||||| |||||||| | ||| ||| |||| | Sbjct 688439 TTCGTTACCTAAG-GCAACTAATAATCTATCAGCAACAAATTCAACATATTGGTTCATTA 688381 Query 4414 GTTC-GCAGTTAATTCCAATTAATCTCACAGGTAGCGCGTATGTCAAA--AACTCTTGTT 4470 | || ||| || || |||| |||| || || | || | |||| | ||||| || Sbjct 688380 GATCAGCA-TTCATACCAAGTAATGCAACTGGAATGGCAT-CAACAAAGTATCTCTT-TT 688324 Query 4471 CTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTTAGA--TGGTTTATTTAC 4528 | || || ||||| | || || ||||| | | |||||| || ||| || || Sbjct 688323 CAATTTCAACAGCTTCAGCAATAAT-TCTTTCA-ATGATCTTTGGATCTGGCTTGTTCTT 688266 Query 4529 TAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAG 4588 ||||| ||||||| ||| ||||| ||| ||| |||||||| ||||| | |||| Sbjct 688265 TAAGTGRGAGAACAATAGACAGGCAAAGTCAGTATGTAAACCTTCATCTCTACAGATCAA 688206 Query 4589 TTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGC 4648 |||||| || || || || || ||||| ||||| | || || | ||| || ||||| || Sbjct 688205 TTCGTTGGAGAAAGTCAAACCAGGCATCAAACCCTTTTTCTTCAACCAGAAGATAGCAGC 688146 Query 4649 AAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAA 4708 |||||| ||||| || || | ||||| || || ||||| || || | || | || Sbjct 688145 AAATGAACCAGAGAAAAAGACACCTTCAACAGCAGCAAAAGCAACCAGTCTTTCAGCAAA 688086 Query 4709 CGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGG 4768 | | | | || |||| ||||||| | | ||||| | ||| |||| ||||| || Sbjct 688085 CAAAGCGTCCTTATCTTGAATCCATCTAATAGCCCATTCAGCCTTTTCCTTAATTTCAGG 688026 Query 4769 AATTGTGTATATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTC 4828 ||| || | ||||||||| ||||| | ||||| ||| || | || || ||||| Sbjct 688025 AATAGTTTCTATAGCGTTTAATAAGAAATCATTTTCCTTTGGATCCTTGATGTATGTGTC 687966 Query 4829 TATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAA 4888 || || || ||| ||||||| || || ||||| || ||| || || ||||| || Sbjct 687965 TAATAATAAAGAATAAGTTTCAGAGTGAATGTTTTCCATCATAATTTGGAAACCGTAGAA 687906 Query 4889 GCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTAC 4948 || ||||||||| | ||||||||| | | || |||| || |||||||| || || Sbjct 687905 ACACTTAGCTTCTGGAATTTGAACTTCAGCAGAGAARTTTTCAACCAAGTTTTCATTGAC 687846 Query 4949 TATACCGTCACTGGCTGCAAAAAACGCCAAAA--CATGAGATATAAAGTACTGT--TCGT 5004 ||||| ||| || ||||| || ||||| | | ||| || ||| | || | | | Sbjct 687845 AATACCATCAGAAGCAGCAAAGAAAGCCAAKACTCTTGAAATGAAAAAT-CTTTCATTTT 687787 Query 5005 CAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCC 5064 || | | || ||||| | | | ||||| |||| ||||| | ||||||| | |||| Sbjct 687786 CATTCATTCTGTTATTCCAATCGTGTAAATCCTTAGACAAATCGATTTCTTCAGCGGTCC 687727 Query 5065 AAAACGACGCTTCCGCTTTTTTGTA 5089 | || || ||||| ||| | || || Sbjct 687726 AGAAAGAAGCTTCGGCTCTCTTATA 687702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427049506315994